Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05428 ATGAATGGAAGGAACAGGTTCCCCTTCACTCCTTCCCAGTGGCAAGAGCTCGAACACCAAGCCCTCATCTACAAATACATGGCTTCAGGTATCTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACCCACTTGGACTCTCCTCTCTCCTCCAGGCTCCTCCCTCACCACTCTCAACACTTTGGGTGGAACTATTTGCCGATGGGATTGGGGAGGAAAATAGACCCTGAGCCAGGTAGATGCAGGAGAACAGATGGAAAGAAATGGAGGTGCTCAAAGGAGGCTTATCCAGATTCAAAGTACTGCGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACATCACCAACGACAGCAACAACGATCACAGATGCCTCAACCCCCACAATCTTATCAATCACCAAAAACAGTCCTGCACTCTCTCCAACCACTCATTCTCTCTCTCATGACACTTACCATCACCACCACCCTCAACATTCCCCCCACTCCTTCCTCTATCATCATCCTTCAAGACCCTCTTCCGGTGTTGCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCTTGCTCTCAGAATAACAACACTGACTGCAGGTATGTGTATGGACTGAAAGAGGAGGTGGATGAGCATGCCTTCTTCACGGAACCTTCTGGAACAATGAGAAGCTTCTCTGCTTCCTCGATGGAAGATTCATGGCAACTCACACCACTGACCATAAGCTCTTCTTCCTCATCGAAACAGAGGAGTTGCTCTGGTTTGTCCAACGACAACAACGAGTACTCCTACCTGCAACTTCAGAGCCTCAGTGGCAACAACTCAAAACAGCCCCAGCAAGATCAGGGTTGCTACATATCAGGAACTGGCAGTGATATAAAGTGTGAAACTTTCATGAAACTTGGGAAAGAAGAACCTCAGAGAACTGTTCATCGGTTCTTCGATGAATGGCCCCCGAAGAGCAGAGGATCATGGCTAGATTTGGATGACAAATCATCCACCACCCAGCTCTCAATTTCCATTCCCACTTCTTCCCATGATTTTGCAACTTTCAGTTCAACAACCCAACGAGATGGTTGA 1116 0.4785 MNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTHLDSPLSSRLLPHHSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTSPTTATTITDASTPTILSITKNSPALSPTTHSLSHDTYHHHHPQHSPHSFLYHHPSRPSSGVALSFQDNSAPLFLDTASCSQNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRSCSGLSNDNNEYSYLQLQSLSGNNSKQPQQDQGCYISGTGSDIKCETFMKLGKEEPQRTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSSHDFATFSSTTQRDG 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05428 371 Pfam WRC 77 119 IPR014977 -
Viun3g05428 371 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun3g05428 371 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun3g05428 371 PANTHER GROWTH-REGULATING FACTOR 5 8 359 IPR031137 GO:0005634|GO:0006351|GO:0032502
Viun3g05428 371 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun3g05428 371 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Viun3g05428 371 MobiDBLite consensus disorder prediction 145 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05428 Viun-Chr3 60311503 60314402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05428 6 119 GRF Transcription Factor Family AT3G13960 71.053 1.04e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Viun3g05428 WRC 7.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05428 - - gmx:100783524 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05428 3 60311503 60314402 Viun3g05428 3 60311503 60314402 ECH
Viun3g05428 3 60311503 60314402 Viun9g00472 9 3339875 3342213 PCT