Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05427 ATGAATGGAAGGAACAGGTTCCCCTTCACTCCTTCCCAGTGGCAAGAGCTCGAACACCAAGCCCTCATCTACAAATACATGGCTTCAGGTATCTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACCCACTTGGACTCTCCTCTCTCCTCCAGGCTCCTCCCTCACCACTCTCAACACTTTGGGTGGAACTATTTGCCGATGGGATTGGGGAGGAAAATAGACCCTGAGCCAGGTAGATGCAGGAGAACAGATGGAAAGAAATGGAGGTGCTCAAAGGAGGCTTATCCAGATTCAAAGTACTGCGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACATCACCAACGACAGCAACAACGATCACAGATGCCTCAACCCCCACAATCTTATCAATCACCAAAAACAGTCCTGCACTCTCTCCAACCACTCATTCTCTCTCTCATGACACTTACCATCACCACCACCCTCAACATTCCCCCCACTCCTTCCTCTATCATCATCCTTCAAGACCCTCTTCCGGTGTTGCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCTTGCTCTCAGAATAACAACACTGACTGCAGGAACAGGTATGTGTATGGACTGAAAGAGGAGGTGGATGAGCATGCCTTCTTCACGGAACCTTCTGGAACAATGAGAAGCTTCTCTGCTTCCTCGATGGAAGATTCATGGCAACTCACACCACTGACCATAAGCTCTTCTTCCTCATCGAAACAGAGGAGTTGCTCTGGTTTGTCCAACGACAACAACGAGTACTCCTACCTGCAACTTCAGAGCCTCAGTGGCAACAACTCAAAACAGCCCCAGCAAGATCAGGGTTGCTACATATCAGGAACTGGCAGTGATATAAAGTGTGAAACTTTCATGAAACTTGGGAAAGAAGAACCTCAGAGAACTGTTCATCGGTTCTTCGATGAATGGCCCCCGAAGAGCAGAGGATCATGGCTAGATTTGGATGACAAATCATCCACCACCCAGCTCTCAATTTCCATTCCCACTTCTTCCCATGATTTTGCAACTTTCAGTTCAACAACCCAACGAGATGGTTGA 1122 0.4786 MNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTHLDSPLSSRLLPHHSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTSPTTATTITDASTPTILSITKNSPALSPTTHSLSHDTYHHHHPQHSPHSFLYHHPSRPSSGVALSFQDNSAPLFLDTASCSQNNNTDCRNRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRSCSGLSNDNNEYSYLQLQSLSGNNSKQPQQDQGCYISGTGSDIKCETFMKLGKEEPQRTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSSHDFATFSSTTQRDG 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05427 373 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun3g05427 373 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun3g05427 373 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun3g05427 373 Pfam WRC 77 119 IPR014977 -
Viun3g05427 373 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Viun3g05427 373 PANTHER GROWTH-REGULATING FACTOR 5 8 361 IPR031137 GO:0005634|GO:0006351|GO:0032502
Viun3g05427 373 MobiDBLite consensus disorder prediction 145 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05427 Viun-Chr3 60311503 60314418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05427 6 119 GRF Transcription Factor Family AT3G13960 71.053 1.12e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Viun3g05427 WRC 7.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05427 - - gmx:100783524 656.366