Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05421 ATGGGGAGAAGCCCTTGTTGTTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACAGCTGATGAAGACAAAATCCTGAGAGAATACATTACACTCCATGGTGAAGGAAGATGGAGAAACCTTCCCAAAACAGCAGGTTTGAAAAGGTGTGGGAAAAGTTGCAGACTTCGATGGCTCAATTATCTCAGACCTGATATTAAGCGAGGCAATATTACCTCTGATGAAGAAGAACTCATTATCAGACTCCACAAGCTCCTGGGAAACAGATGGTCTTTAATAGCAGGGAGGCTTCCAGGACGAACAGACAATGAAATCAAGAATTATTGGAACACCAATTTAGGTAAAAAGGTGAAAGATGGCCACAAAACCTCAACCTCTTGTCGCACACAGATCCCCAATCCTAAACTAGATTCCCACCTAGTCCGTACAAAAGCCACCAAGTGCACTAAGCTCTTTTTCCCTCACCCATCAATGCTGCAACTCCCCGACAACTCCCACCAACAACAAAACCTTGTCGCCGATGCTGTTATGACTCACCACCTGGAACTCACTACCACAGATTTCAACGTCGGAGATATCTGTTTTTCTGATCTTCTCGACTCCGATTTCACCGATATCTGCAACAACGACCTCTTATTCTCTCCTTCTTCGGACCAACCTTATCATCCACTGTGCTCCCAAGAACTTCTCAAGAACTGGACGCAAACCAATTTCGCAGACCAAACCACTGCTTCAAACAACCTTCATTCTTTCATTTCGTTCCTCGACACCACCGAGGAAACACTGGGACAATCATAA 795 0.4491 MGRSPCCSKEGLNRGAWTADEDKILREYITLHGEGRWRNLPKTAGLKRCGKSCRLRWLNYLRPDIKRGNITSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDGHKTSTSCRTQIPNPKLDSHLVRTKATKCTKLFFPHPSMLQLPDNSHQQQNLVADAVMTHHLELTTTDFNVGDICFSDLLDSDFTDICNNDLLFSPSSDQPYHPLCSQELLKNWTQTNFADQTTASNNLHSFISFLDTTEETLGQS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05421 264 CDD SANT 16 61 IPR001005 -
Viun3g05421 264 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Viun3g05421 264 Gene3D - 14 66 - -
Viun3g05421 264 SMART sant 13 63 IPR001005 -
Viun3g05421 264 SMART sant 66 114 IPR001005 -
Viun3g05421 264 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun3g05421 264 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun3g05421 264 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun3g05421 264 Gene3D - 70 137 - -
Viun3g05421 264 FunFam Transcription factor TT2 70 138 - -
Viun3g05421 264 FunFam MYB-related transcription factor 13 66 - -
Viun3g05421 264 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 159 - -
Viun3g05421 264 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun3g05421 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun3g05421 264 CDD SANT 71 112 IPR001005 -
Viun3g05421 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05421 Viun-Chr3 60283286 60284693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05421 1 116 MYB Transcription Factor Family AT2G16720 73.276 1.11e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun3g05421 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05421 K09422 - gmx:100802704 369.777