Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05412 ATGGGTGATTTCCAAGGCCCCTTCGTAGTGTCACCCCCTCCTTCACCCTCTTCCTCGGACAAGTCCAGCACAACCATGTTATACTATGGCCTTGTAGTGGTGGGTGTTGCAGCTACGGCATTAGCCCTGTACAACTGCATCATCATCAGGAGGAGCAGAAGGCACGACATGCAGTCAGAAGGTGAAGGGGCAAATGGGTTGGTGGAGGTGGTGATGGAAAGTAGAATAGAAAACTGTGAAAGGAACTTCAACTTGGTTTCAAGCTTCAAGTACAAGAACGAAGGAGTTGTGGGTTATGATGATGAATGCTCAGTTTGCTTATCTGGTTTTGAAGAAGGAGAAGAAGTTCGGAAGCTTCCAGAGTGCAAGCACTGGTTCCACGCTCCATGCATAGACATGTGGCTCTACTCTCACTTGGACTGCCCAATTTGTCGAACACCTGTGCTGCGTTTCTCGCAGGCATTGCTGGAATCGGGTAGTGGTGTGTTGGAATGA 495 0.4909 MGDFQGPFVVSPPPSPSSSDKSSTTMLYYGLVVVGVAATALALYNCIIIRRSRRHDMQSEGEGANGLVEVVMESRIENCERNFNLVSSFKYKNEGVVGYDDECSVCLSGFEEGEEVRKLPECKHWFHAPCIDMWLYSHLDCPICRTPVLRFSQALLESGSGVLE 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05412 164 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g05412 164 CDD RING-H2_EL5-like 102 145 - -
Viun3g05412 164 FunFam RING-H2 finger protein ATL52 68 150 - -
Viun3g05412 164 SMART ring_2 103 144 IPR001841 -
Viun3g05412 164 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 18 148 IPR044675 -
Viun3g05412 164 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Viun3g05412 164 Pfam Ring finger domain 101 145 IPR001841 -
Viun3g05412 164 SUPERFAMILY RING/U-box 95 150 - -
Viun3g05412 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 152 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05412 Viun-Chr3 60245084 60248001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05412 31 162 C3H Transcription Factor Family AT5G17600 36.111 1.36e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05412 - - vun:114177506 307.76