Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05409 ATGCTTACGTGCATAGCTCGTCCGAAGAAACCTGATGAGTCAGATCCAAACAACGCGACAAGCGCCGCTAAATCGCAAGCCATCAAATCCCTTACTTCCCAGATAAGGGATATGGCGTTGAAGGCTTCGGGAGCCTACAAGCATTGCGCTCCGTGCACGGGGCCAGCGGCGCAGGGACGAGTGAGGAGCAACACCGAGTCGGACGCGGACTCCGACCGGTTCCGGTGGTCGTACCGGCGGACAGGGAGTTCAAGCTCGACGACCACTCGGACGTGGGGGAAGGAGATGGAGGCGCGGTTGAAGGGGATATCGAGCGGGGAGGGGACGCCGAACTCCGCCAGCGGACGGCGAGCGGAGCCGTTGGTGCTGTTCGTGGAAGAGAACGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATTACCTTCGTGTCGTTGCCACGTGGCGGTAACGATCTCAAACGCATTCGGTTCAGTCGAGAGATGTTCAACAAATGGCAAGCACAAAGGTGGTGGGCAGATAACTACGACAAAGTTATGGAACTTTACAATGTTCAAAGGTTTAGCCGCCAAGCATTCCCTCTTCCGACGCCGCCAAGATCTGAAGATGAGAGCACAAAGCTTGAATCAGCAGAAGCCAGTCCTGTAACACCTCCACTGACCAGGGAACGGTTACCTCGTACTCTTTACCGTCCAACAGGGATGGGAATGGGATACTCATCCTCAGATTCCTTTGATCATCAATCAATGCAATCCCGGCATTTCTACGACTCAAATGGTTTGAACTCTACCCCAAAAGTGTCCACTATTAGTGCCGCCAAGACGGAGATATCATCAATGGATGCTTCTATCAGAAGTAGCTCATCCAGAGAGGCTGATCGCTCTGGTGATTTATCAATCAGCAATGCCAGTGAGTTGGAGACTGAGTGGGTTGAACAGGATGAACCTGGTGTTTACATTACAATCAGAGCATTGCCAGGTGGCGCAAGGGAGCTCAAACGAGTCAGGTTTAGCCGAGAAAAATTTGGAGAGATGCATGCTAGATTATGGTGGGAGGAGAACCGTGCCAGAATACATGAACAATACTTGTGA 1098 0.5282 MLTCIARPKKPDESDPNNATSAAKSQAIKSLTSQIRDMALKASGAYKHCAPCTGPAAQGRVRSNTESDADSDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRAEPLVLFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNKWQAQRWWADNYDKVMELYNVQRFSRQAFPLPTPPRSEDESTKLESAEASPVTPPLTRERLPRTLYRPTGMGMGYSSSDSFDHQSMQSRHFYDSNGLNSTPKVSTISAAKTEISSMDASIRSSSSREADRSGDLSISNASELETEWVEQDEPGVYITIRALPGGARELKRVRFSREKFGEMHARLWWEENRARIHEQYL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05409 365 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 365 IPR044532 -
Viun3g05409 365 MobiDBLite consensus disorder prediction 49 70 - -
Viun3g05409 365 ProSiteProfiles BRX domain profile. 310 365 IPR013591 -
Viun3g05409 365 Pfam Transcription factor BRX N-terminal domain 20 52 IPR027988 -
Viun3g05409 365 MobiDBLite consensus disorder prediction 1 27 - -
Viun3g05409 365 MobiDBLite consensus disorder prediction 196 224 - -
Viun3g05409 365 Pfam Transcription factor regulating root and shoot growth via Pin3 309 364 IPR013591 -
Viun3g05409 365 Pfam Transcription factor regulating root and shoot growth via Pin3 131 185 IPR013591 -
Viun3g05409 365 ProSiteProfiles BRX domain profile. 131 186 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05409 Viun-Chr3 60219262 60224712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05409 1 365 Major Intrinsic Protein MIP AT1G31880 44.473 5.10e-91 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05409 - - gmx:100794109 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05409 3 60219262 60224712 Viun3g05409 3 60219262 60224712 ECH
Viun3g05409 3 60219262 60224712 Viun9g00457 9 3210361 3215011 PCT