LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g05409	ATGCTTACGTGCATAGCTCGTCCGAAGAAACCTGATGAGTCAGATCCAAACAACGCGACAAGCGCCGCTAAATCGCAAGCCATCAAATCCCTTACTTCCCAGATAAGGGATATGGCGTTGAAGGCTTCGGGAGCCTACAAGCATTGCGCTCCGTGCACGGGGCCAGCGGCGCAGGGACGAGTGAGGAGCAACACCGAGTCGGACGCGGACTCCGACCGGTTCCGGTGGTCGTACCGGCGGACAGGGAGTTCAAGCTCGACGACCACTCGGACGTGGGGGAAGGAGATGGAGGCGCGGTTGAAGGGGATATCGAGCGGGGAGGGGACGCCGAACTCCGCCAGCGGACGGCGAGCGGAGCCGTTGGTGCTGTTCGTGGAAGAGAACGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATTACCTTCGTGTCGTTGCCACGTGGCGGTAACGATCTCAAACGCATTCGGTTCAGTCGAGAGATGTTCAACAAATGGCAAGCACAAAGGTGGTGGGCAGATAACTACGACAAAGTTATGGAACTTTACAATGTTCAAAGGTTTAGCCGCCAAGCATTCCCTCTTCCGACGCCGCCAAGATCTGAAGATGAGAGCACAAAGCTTGAATCAGCAGAAGCCAGTCCTGTAACACCTCCACTGACCAGGGAACGGTTACCTCGTACTCTTTACCGTCCAACAGGGATGGGAATGGGATACTCATCCTCAGATTCCTTTGATCATCAATCAATGCAATCCCGGCATTTCTACGACTCAAATGGTTTGAACTCTACCCCAAAAGTGTCCACTATTAGTGCCGCCAAGACGGAGATATCATCAATGGATGCTTCTATCAGAAGTAGCTCATCCAGAGAGGCTGATCGCTCTGGTGATTTATCAATCAGCAATGCCAGTGAGTTGGAGACTGAGTGGGTTGAACAGGATGAACCTGGTGTTTACATTACAATCAGAGCATTGCCAGGTGGCGCAAGGGAGCTCAAACGAGTCAGGTTTAGCCGAGAAAAATTTGGAGAGATGCATGCTAGATTATGGTGGGAGGAGAACCGTGCCAGAATACATGAACAATACTTGTGA	1098	0.5282	MLTCIARPKKPDESDPNNATSAAKSQAIKSLTSQIRDMALKASGAYKHCAPCTGPAAQGRVRSNTESDADSDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRAEPLVLFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNKWQAQRWWADNYDKVMELYNVQRFSRQAFPLPTPPRSEDESTKLESAEASPVTPPLTRERLPRTLYRPTGMGMGYSSSDSFDHQSMQSRHFYDSNGLNSTPKVSTISAAKTEISSMDASIRSSSSREADRSGDLSISNASELETEWVEQDEPGVYITIRALPGGARELKRVRFSREKFGEMHARLWWEENRARIHEQYL	365

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun3g05409	365	PANTHER	PROTEIN BREVIS RADIX-LIKE 1	1	365	IPR044532	-
Viun3g05409	365	MobiDBLite	consensus disorder prediction	49	70	-	-
Viun3g05409	365	ProSiteProfiles	BRX domain profile.	310	365	IPR013591	-
Viun3g05409	365	Pfam	Transcription factor BRX N-terminal domain	20	52	IPR027988	-
Viun3g05409	365	MobiDBLite	consensus disorder prediction	1	27	-	-
Viun3g05409	365	MobiDBLite	consensus disorder prediction	196	224	-	-
Viun3g05409	365	Pfam	Transcription factor regulating root and shoot growth via Pin3	309	364	IPR013591	-
Viun3g05409	365	Pfam	Transcription factor regulating root and shoot growth via Pin3	131	185	IPR013591	-
Viun3g05409	365	ProSiteProfiles	BRX domain profile.	131	186	IPR013591	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g05409	Viun-Chr3	60219262	60224712	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g05409	1	365	Major Intrinsic Protein MIP	AT1G31880	44.473	5.10e-91	275

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g05409	-		-	gmx:100794109	674.47

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun3g05409	3	60219262	60224712	Viun3g05409	3	60219262	60224712	ECH
	Viun3g05409	3	60219262	60224712	Viun9g00457	9	3210361	3215011	PCT

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