Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun3g05398 | ATGGTTTGGTTTCAATGCGAAGATTGTGGAGACAACCTCAAAAAACCCAAGTTGTCTAGTCACTTTCGGACTTGCTCCGCTTACAAATTGTCGTGCATTGACTGTGGGGAAATATTTGGGCGTGACACCGTTCAGGATCACACACAGTGCATTACAGAAGCGGAAAAGTATGGTCCAAAAGGCCAAGGCAAAACTTTGAGTGCTGCAACTGCCACGCCTAACAAGGATAACAAACAGAGGCCTGAAGTTGATACTAATGTGGGTTTATCTGAGCAGCCTCCTTGGTTCTGTAGTCTTTGCAATACAACAACTACAAGTAAGCAAACACTTCTTCTCCATGCTGACGGAAAGAAGCACAGGGCAAAGGCGAGAGCATTCCATGCTTCAAAGCAGCAACCAGTCCAGGCAGATAAATCTGTTACCGATGATGCTAAGACTGTTGTGGAGACAGGTCCTAATGACAAGGTGAGAGATGAGAGTAATGTAGAGGTGCCAAAATTGAAGGAGTCTTCTACACAAAATGACTCAAAACCAGGGAATGAAACTTCAGCAAAGAAAAAGAGGAAACTTGAAGCATTGGGGGATGGGAAATCTGTTGACCTTGTTAAAAAAAGCAGGAATGGCACTTCGGTTGACATGGGAAATGGAGAAGTAATTCAGGGTGAAAAAACAACAGGAGAGGGGAATTTGAAGAAAGAAGGGATGCTAGAACCTCACAGTACAAGTACTGTTGAAAATAAAATAAAATGGAGGAAACTTCTCAGATCAGCCTTCAAATCTCATCCTGATGGAATTTTGAAGATGAAGAAACTTAGAAAAGTTGTCCTCAAAGCACTGCAGAAATCTGGCATTGCAATGGATGAAGCTGAATTGAGCAAGGCGCTTGAGCAGAAGATCAATGCCAGCTGCAGATATGCAGTCGAGAACAAGTACGTGCGATTGGTGCCTAAAGACTGA | 957 | 0.4326 | MVWFQCEDCGDNLKKPKLSSHFRTCSAYKLSCIDCGEIFGRDTVQDHTQCITEAEKYGPKGQGKTLSAATATPNKDNKQRPEVDTNVGLSEQPPWFCSLCNTTTTSKQTLLLHADGKKHRAKARAFHASKQQPVQADKSVTDDAKTVVETGPNDKVRDESNVEVPKLKESSTQNDSKPGNETSAKKKRKLEALGDGKSVDLVKKSRNGTSVDMGNGEVIQGEKTTGEGNLKKEGMLEPHSTSTVENKIKWRKLLRSAFKSHPDGILKMKKLRKVVLKALQKSGIAMDEAELSKALEQKINASCRYAVENKYVRLVPKD | 318 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun3g05398 | 318 | Gene3D | - | 1 | 50 | - | - | |
| Viun3g05398 | 318 | PANTHER | CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR | 1 | 315 | IPR039999 | GO:0003677 | |
| Viun3g05398 | 318 | MobiDBLite | consensus disorder prediction | 58 | 87 | - | - | |
| Viun3g05398 | 318 | FunFam | cell growth-regulating nucleolar protein-like | 1 | 50 | - | - | |
| Viun3g05398 | 318 | SUPERFAMILY | beta-beta-alpha zinc fingers | 87 | 127 | IPR036236 | - | |
| Viun3g05398 | 318 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1 | 26 | IPR036236 | - | |
| Viun3g05398 | 318 | ProSiteProfiles | Zinc finger C2HC LYAR-type profile. | 1 | 26 | - | - | |
| Viun3g05398 | 318 | Pfam | Zinc-finger of C2H2 type | 95 | 119 | - | - | |
| Viun3g05398 | 318 | Pfam | LYAR-type C2HC zinc finger | 30 | 57 | IPR014898 | - | |
| Viun3g05398 | 318 | SUPERFAMILY | beta-beta-alpha zinc fingers | 30 | 58 | IPR036236 | - | |
| Viun3g05398 | 318 | Gene3D | Classic Zinc Finger | 71 | 125 | - | - | |
| Viun3g05398 | 318 | MobiDBLite | consensus disorder prediction | 121 | 197 | - | - | |
| Viun3g05398 | 318 | ProSiteProfiles | Zinc finger C2HC LYAR-type profile. | 27 | 51 | - | - | |
| Viun3g05398 | 318 | MobiDBLite | consensus disorder prediction | 180 | 197 | - | - | |
| Viun3g05398 | 318 | SMART | ZnF_U1_5 | 92 | 126 | IPR003604 | GO:0003676|GO:0008270 | |
| Viun3g05398 | 318 | FunFam | UBP1-associated proteins 1C | 89 | 132 | - | - | |
| Viun3g05398 | 318 | MobiDBLite | consensus disorder prediction | 142 | 165 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun3g05398 | 54 | 233 | C2H2 Transcription Factor Family | AT2G19380 | 34.254 | 1.04e-16 | 79.0 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Viun3g05398 | 3 | 60094730 | 60098079 | Viun3g05398 | 3 | 60094730 | 60098079 | ECH |