Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05396 ATGAAGAAAGGAAACTTGGGACCTGGTCTCAAACTCTCGGTTCCTGTTTCTGATCAATCCAATTTTGCCAAGTTCCTGACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTTCGAATTGTCTCTCAGAGTGATGTCGAAGCTCCACCTCCGATCAAGCCTACAGACGACCAGTTAACTTTGGCAGATGTAGATGTTATCAAAGTTGTTGGAAAGGGAAATGGAGGGGTAGTCCAATTGGTGCAACACAAATGGACTAGTCAGTTTTTTGCATTGAAGGTAATTCAAATGAATATTGAGGAGTCTATGAGAAGGCAGATTGCACAAGAGTTGAAAATTAATCAACAGGCACAGTGTCCTTATGTTGTCATCTGCTATCAGTCATTTTATGAAAACGGTGTCATATCAATCATCTTAGAGTACATGGATGGGGGTTCCTTAGCTGATCTACTGAGGAAAGTTAAAACAATTCCAGAGCCTTTTCTTGCTGCCATCTGTAAGCAGGTGCTGAAGGGTTTAGTTTACCTTCACCATGAAAAGCATATTATCCACAGAGACTTGAAGCCTTCTAATTTGTTAATAAATCATATAGGAGAAGTAAAGATTACTGACTTTGGTGTGAGTTCAATTATGGAAAGTACATCTGGTCAAGCAAATACCTTCATTGGAACTTACAACTATATGTCTCCGGAGAGAATCAATGGAAGCCAGCGAGGCTACAACTACAAAAGTGATATATGGAGTTTGGGACTAATATTGCTTGAGTGTGCTTTGGGAAGGTTTCCATATACCCCAGACGATCAAAGTGAAAGTTGGGAAAGCATTTTCGAGCTTATTGAAACCATTGTTGATAAACCTCCTCCTATTCCTCCGTCTGGACAATTTTCTCCAGAATTCTGCGCATTTATCTCAGCATGTCTACAGAAAGACCCAAAGAATCGACTGTCAGCTCAGGAATTAATGGGACATCCTTTTGTCAGCTTGTATGATGACTCGGAGGTGAATCTTTCATCTTACTTCTCCAATGCAGGATCTCCTCTTGCTACCTTATAA 1071 0.408 MKKGNLGPGLKLSVPVSDQSNFAKFLTESGTFKDGDLLVNRDGVRIVSQSDVEAPPPIKPTDDQLTLADVDVIKVVGKGNGGVVQLVQHKWTSQFFALKVIQMNIEESMRRQIAQELKINQQAQCPYVVICYQSFYENGVISIILEYMDGGSLADLLRKVKTIPEPFLAAICKQVLKGLVYLHHEKHIIHRDLKPSNLLINHIGEVKITDFGVSSIMESTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECALGRFPYTPDDQSESWESIFELIETIVDKPPPIPPSGQFSPEFCAFISACLQKDPKNRLSAQELMGHPFVSLYDDSEVNLSSYFSNAGSPLATL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05396 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Viun3g05396 356 Pfam Protein kinase domain 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05396 356 FunFam Mitogen-activated protein kinase kinase 6 40 149 - -
Viun3g05396 356 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05396 356 FunFam Mitogen-activated protein kinase kinase 6 151 351 - -
Viun3g05396 356 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05396 356 SUPERFAMILY Protein kinase-like (PK-like) 67 340 IPR011009 -
Viun3g05396 356 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Viun3g05396 356 CDD PKc_MAPKK_plant_like 85 336 - -
Viun3g05396 356 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Viun3g05396 356 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 17 349 - -
Viun3g05396 356 Gene3D Transferase(Phosphotransferase) domain 1 150 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05396 Viun-Chr3 60076377 60081091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05396 1 327 MAP Kinase Kinase Gene Family AT4G29810 66.667 2.40e-171 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Viun3g05396 Pkinase 4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05396 K20603 - gmx:100789734 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05396 3 60076377 60081091 Viun3g05396 3 60076377 60081091 ECH