Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05394 ATGGAGGAAATATCTTCGAGTGTTGCAGTACCTTTTACACTTGGTGTTGGGAATTTGATTCAAAAAGAGTCTGCAGTGACAACTCACATGGAGATAACTGGGCTGAAGATTATGGCAAATACAGCAGCGGCTGCTTTGATGTTAAATCCTGCAGTGGAGTGTTGTCAGTCATATTCTGTTGGAAGTGAAAGCCATGCAGATGTAACTCTGCAGCACCAGATCATGGTATCTGCGGAGGTAAAGGAGAATCAAGTTGGGGATGCCCTTGTCTCAGAAATGGTTATTGAATGTGAGAGTAATTGGGTTTTGAATGAAACCCATCATAAGGCTAGAAAGGAAGATGAACTAATGTTAGCTGTGGATTTTCACTGTCTTCATAGTTCAAGCTCTCAGTCTGTGGCTAATGGCCAAAGTGATCCTTGTAGGGAGGAAGCTGTGCCGTTGAAGACTAGTTATTCTGAAATAGAATCACCAATCACCATGAATGTTGATGATGTTCATGGCAAGTCTGGAGTAAACTCAGTGGAGAACACAGTTTCTGTTGCAATGGATATTACTAGTGAGGATCAAAGTGGATCAGATGAGTCCGATCCTAAATCATCTGCTGTGCTTCTTGACCAGTTGCCTGAGGAGAATAAAGCATGGAGAACAAGCAACAAAAATGCCTTGGAATTGAATAGTGGCCCTCTGTGGGGTTATTCATCAATTTGTGGAATGAGGCAGGAGATGGAAGATGTTATTTCTGTCCAGCCTCAACTTTTTCAAGTTCCTTCACAGATGCTGATGAAAGACCACGTAAATGAGAACGAAAAACAGTCACTAGCCCACTTTTTCGCCGTCTACGATGGACATGGGGGCCTTCAGGTTGCTAACTACTGCCAGGAACGTCTTCATTCAGTACTGATTGAGGAGATAGAGGCTGCGCAATCAAGTTTGGCTGAAACAAATGGGAGAGATGATTGGCAGGATCATTGGAAGAAAGCATTCACCAATTGTTTTCAGAGAGTAGATGATGAGGTTGGAGGAACTGATGCAAGTAATAATGGAAACAACAGCGGTGGATCTGAGTCCATTATTGAACCTGTTGCTGCTGAGACTGCTGGTTCCACTGCAGTTGTGGCTATTTTAAGTCAAACCCTCATAATAGTTGCAAATTGTGGAGATTCAAGAACTGTCTTGTACCGTGGAAAAGAGGCCATGCCACTGTCTTCTGACCACAAACCAAATAGAGAGGACGAGAGGGCAAGGATAGAAGCTGCAGGAGGAAGAGTCATACATTGGAAAGGATATCGAGTTCTTGGTGTCTTGGCAATGTCAAGGTCCATAGGTGATAGATACCTTAAGCCATGGATAATTCCAGAACCTGAAGTGAATATTGTGCGTAGAGAGAAAAACGACGAGTGTCTTATTCTAGCAAGTGATGGTTTGTGGGATGTAATGACAAATGAAGAAGCGTGCGAGGTTGCTAGGAAGAGAATCCTTCTTTGGCACAAAAAGTTTGGTGAAAACGGAGCAACAGGACATGGCGAAGGAGCTGATCCTGCAGCTCAATCTGCTGCAGAGTATCTAACAAAGCTTGCCATCCACAGGGGAAGCCAAGATAACATCTCTGTAATTGTGATAGACTTAAAGGCTCAAAGAAGAATTAAGCGAAAGCCTTAA 1662 0.4332 MEEISSSVAVPFTLGVGNLIQKESAVTTHMEITGLKIMANTAAAALMLNPAVECCQSYSVGSESHADVTLQHQIMVSAEVKENQVGDALVSEMVIECESNWVLNETHHKARKEDELMLAVDFHCLHSSSSQSVANGQSDPCREEAVPLKTSYSEIESPITMNVDDVHGKSGVNSVENTVSVAMDITSEDQSGSDESDPKSSAVLLDQLPEENKAWRTSNKNALELNSGPLWGYSSICGMRQEMEDVISVQPQLFQVPSQMLMKDHVNENEKQSLAHFFAVYDGHGGLQVANYCQERLHSVLIEEIEAAQSSLAETNGRDDWQDHWKKAFTNCFQRVDDEVGGTDASNNGNNSGGSESIIEPVAAETAGSTAVVAILSQTLIIVANCGDSRTVLYRGKEAMPLSSDHKPNREDERARIEAAGGRVIHWKGYRVLGVLAMSRSIGDRYLKPWIIPEPEVNIVRREKNDECLILASDGLWDVMTNEEACEVARKRILLWHKKFGENGATGHGEGADPAAQSAAEYLTKLAIHRGSQDNISVIVIDLKAQRRIKRKP 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05394 553 Pfam Protein phosphatase 2C 249 536 IPR001932 -
Viun3g05394 553 CDD PP2Cc 232 543 IPR001932 -
Viun3g05394 553 SUPERFAMILY PP2C-like 227 544 IPR036457 -
Viun3g05394 553 Gene3D - 217 553 IPR036457 -
Viun3g05394 553 FunFam Protein phosphatase 2C 16 218 553 - -
Viun3g05394 553 ProSitePatterns PPM-type phosphatase domain signature. 277 285 IPR000222 GO:0043169
Viun3g05394 553 PANTHER PROTEIN PHOSPHATASE 196 543 IPR015655 GO:0004722|GO:0006470
Viun3g05394 553 ProSiteProfiles PPM-type phosphatase domain profile. 230 543 IPR001932 -
Viun3g05394 553 SMART PP2C_4 220 541 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05394 Viun-Chr3 60072452 60076308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05394 207 552 PP2C-type Phosphatase Gene Family AT1G17550 56.000 6.33e-135 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05394 K14497 - gmx:100789207 885.945