Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05388 ATGATCGAGAAGGAGCAATTAAAAATCTCGTTGACCAACGAAATAATGTCCACACCACCGTTGCTGAGATCGGTTGCCGTCGCTGTGAGCGGCGGCTCCAGCAAGGGTAGCCGGCGAGCCGTGCAGTGGGCGGTGGATAATCTGGTCCCTCAAGCCGACAGGTTCATCTTAGTTCACGTTATCCCTCCAATCACTTCAATTGCCACACCAACTGAAGAGTATATTCCTGTTTCGGAAGCACACGCCGATGTCTTTGCAGCTTATGTGGACGATGTGAAGCAAAAATCTGAACAAATCTTCGTCCCGTTCAAAAAACTCTGCGGCTCAAACACTATGGAAACAGTACTACTAGAAGATGACAACGTGGCAGAAGCACTTCTTAGCTTTATTTCTGAGTCCGGGGTCCAAACATTAGTGCTGGGTTCTGACTCCTCAAATTTTATAACAAGGAAGCTAAAAGGACCTGGAATATCAACTACCAGCCTAAGATGTGCCCCAGACAGTTGTGATGTGTATGTTGTTGCTAGAGACAGAATTGTTTCGAAGTTGGCCGATCTGTCATCTTCACATTCTCGTGAGGCTAGCCCAAGTTACTTCATGTCTACTAAAGTAAATAAAGTAGACAATGAGGCTGGCATTGACAGAGAAATGTCGGGAATCAGTTCATCCACAACAGAGTCTAAAATCCTAAAGAATTTCAGATTTTTATCAATATCCGAGCATAGTTACATTGGTCTGCAAACATTTAGTCGCAGGGATTCTTTTGAAAATTCTATCAACAATGATAATCCAGAAAACTGTGGAGATGATATTGAAATGATTAGCCTCCACACTTTTGATTCCATTGCTTCTGCACAACGTGAACAGTTAGCCATGCAAGAAGAAGTAGAACGGCTGCAACTGGAGTTGCAAAGTACTATCGCCATGTACAAACAGGTTTGTCAAGAGCTGGTTCAAGCTCAAAACCAGGCCCTTTTACTTTCTTCTGAATCTCTTGAAGAAACTAAAAGAGTGAATGCTTCCCTAAAAAGAGAGGAGGTTTTGAGAAAGATTGCTTCTGAAGAGAAAACTAAGTATTTAAAAGTCATGAAGGAACTTGAGGAGGCGAAAAATAAGTTTTCCAAAGAGTCCTATGAAAGACAGATGGCTGAACTTGATGTCCTTAAAGAATCAATAGAGAAACAGAGAATTGTTGATACATTGCTCTCAAATGACAGGAGATACAGAAAGTACACCATGGACGACATCAAGATAGCCACAAAATTCTTCTCTGAGGATTTGATGATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGTAATCTTGATCACACACCTGTAGCTGTAAAGGTTCTGCATCAGGATGCAATCAACAAGAAAGAGGAGTTTCTAAAAGAGGTTGAGATTCTTAGTCAACTACATCATCCTAATATGGTTTTGTTACTTGGAGCCTGTCCGGAGAATGGTTGCCTAGTTTATGAATACCTGGAAAATGGAAGTCTAGAAGACTATCTTCTCAACAAAAATAGAAAACCACCACTTCCATGGTTTTTTCGATTTCGCATAGTTTTTGAAATGGCTTGCGGGCTTTCATTCTTGCATAATTCGAAGCCAGAACCGATTGTACATCGAGATATAAAACCTGGCAACATTTTGTTAGACAGAAATTATGTGAGCAAAATTTCTGATGTTGGGCTGGCTAAACTCCTTATAGAAGTTCCTCCTGACAATATTACAGAGTACCGAGAATCAGTCCTTGCCGGCACTCTGCATTACATGGACCCAGAATATCAGAGAACTGGCACTGTGCGACCGAAATCAGATGTATATGCATTTGGAGTTATAACTCTTCAATTAATAACTGGTCGCCATGCACGTGGGCTCATTATGATTGTTGAAGATGCAATTAGAAATGGCTCCCTCCGTGATATTTTAGATGCATCAGCTGGAGATTGGCCATTGGATGAGACAATGGAATTGGCTCAAGTTGCCCTTAAATGCACAGCACTTAGATGCAGAGATAGACCAGAACTTGATACTGAAGTTCTTCCACTGCTCGAAAGATTTTCTAATGCGGCAAATGCCAGTGCAAGGATAGGAAGAAATAGTGTAAGTGCACCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGGTTCACTTATGAGTACAGAGCAATCAAGGCATGGATTAGCAGACACAATGTGTCACCCATGACAAAGCTTAAACTTCAGCATTCTGTGTTGACTCCGAACCATACTCTACGTTCTGCCATTCAAGAGTGGAAGTCAGGAGTCACCTTTTGA 2334 0.4165 MIEKEQLKISLTNEIMSTPPLLRSVAVAVSGGSSKGSRRAVQWAVDNLVPQADRFILVHVIPPITSIATPTEEYIPVSEAHADVFAAYVDDVKQKSEQIFVPFKKLCGSNTMETVLLEDDNVAEALLSFISESGVQTLVLGSDSSNFITRKLKGPGISTTSLRCAPDSCDVYVVARDRIVSKLADLSSSHSREASPSYFMSTKVNKVDNEAGIDREMSGISSSTTESKILKNFRFLSISEHSYIGLQTFSRRDSFENSINNDNPENCGDDIEMISLHTFDSIASAQREQLAMQEEVERLQLELQSTIAMYKQVCQELVQAQNQALLLSSESLEETKRVNASLKREEVLRKIASEEKTKYLKVMKELEEAKNKFSKESYERQMAELDVLKESIEKQRIVDTLLSNDRRYRKYTMDDIKIATKFFSEDLMIGEGGYGKVYKCNLDHTPVAVKVLHQDAINKKEEFLKEVEILSQLHHPNMVLLLGACPENGCLVYEYLENGSLEDYLLNKNRKPPLPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLLIEVPPDNITEYRESVLAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLIMIVEDAIRNGSLRDILDASAGDWPLDETMELAQVALKCTALRCRDRPELDTEVLPLLERFSNAANASARIGRNSVSAPSQYYCPILQEIMDDPYIAADGFTYEYRAIKAWISRHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGVTF 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05388 777 Coils Coil 282 302 - -
Viun3g05388 777 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 175 - -
Viun3g05388 777 CDD STK_N 24 176 - -
Viun3g05388 777 Pfam Universal stress protein family 24 154 IPR006016 -
Viun3g05388 777 Pfam Protein tyrosine and serine/threonine kinase 428 679 IPR001245 GO:0004672|GO:0006468
Viun3g05388 777 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 706 775 IPR013083 -
Viun3g05388 777 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 395 495 - -
Viun3g05388 777 PANTHER OS02G0152300 PROTEIN 25 770 - -
Viun3g05388 777 Gene3D HUPs 22 174 IPR014729 -
Viun3g05388 777 Pfam U-box domain 707 772 IPR003613 GO:0004842|GO:0016567
Viun3g05388 777 Gene3D Transferase(Phosphotransferase) domain 1 496 705 - -
Viun3g05388 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 541 553 IPR008271 GO:0004672|GO:0006468
Viun3g05388 777 ProSiteProfiles Protein kinase domain profile. 423 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05388 777 SUPERFAMILY Protein kinase-like (PK-like) 406 678 IPR011009 -
Viun3g05388 777 SUPERFAMILY RING/U-box 700 772 - -
Viun3g05388 777 Gene3D Phosphorylase Kinase; domain 1 402 495 - -
Viun3g05388 777 ProSiteProfiles U-box domain profile. 705 777 IPR003613 GO:0004842|GO:0016567
Viun3g05388 777 Coils Coil 349 395 - -
Viun3g05388 777 SMART Ubox_2 709 771 IPR003613 GO:0004842|GO:0016567
Viun3g05388 777 SMART serkin_6 423 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05388 777 CDD RING-Ubox_WDSUB1-like 707 761 - -
Viun3g05388 777 ProSitePatterns Protein kinases ATP-binding region signature. 429 450 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05388 Viun-Chr3 60021414 60029556 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05388 9 773 Plant U-box Gene Family AT5G57035 52.157 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun3g05388 PK_Tyr_Ser-Thr 8.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05388 - - vun:114178082 1476.84