Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05387 ATGATCGAGAAGGAGCAATTAAAAATCTCGTTGACCAACGAAATAATGTCCACACCACCGTTGCTGAGATCGGTTGCCGTCGCTGTGAGCGGCGGCTCCAGCAAGGGTAGCCGGCGAGCCGTGCAGTGGGCGGTGGATAATCTGGTCCCTCAAGCCGACAGGTTCATCTTAGTTCACGTTATCCCTCCAATCACTTCAATTGCCACACCAACTGAAGAGTATATTCCTGTTTCGGAAGCACACGCCGATGTCTTTGCAGCTTATGTGGACGATGTGAAGCAAAAATCTGAACAAATCTTCGTCCCGTTCAAAAAACTCTGCGGCTCAAACACTATGGAAACAGTACTACTAGAAGATGACAACGTGGCAGAAGCACTTCTTAGCTTTATTTCTGAGTCCGGGGTCCAAACATTAGTGCTGGGTTCTGACTCCTCAAATTTTATAACAAGTTTTTCTTCTTCCAGGAAGCTAAAAGGACCTGGAATATCAACTACCAGCCTAAGATGTGCCCCAGACAGTTGTGATGTGTATGTTGTTGCTAGAGACAGAATTGTTTCGAAGTTGGCCGATCTGTCATCTTCACATTCTCGTGAGGCTAGCCCAAGTTACTTCATGTCTACTAAAGTAAATAAAGTAGACAATGAGGCTGGCATTGACAGAGAAATGTCGGGAATCAGTTCATCCACAACAGAGTCTAAAATCCTAAAGAATTTCAGATTTTTATCAATATCCGAGCATAGTTACATTGGTCTGCAAACATTTAGTCGCAGGGATTCTTTTGAAAATTCTATCAACAATGATAATCCAGAAAACTGTGGAGATGATATTGAAATGATTAGCCTCCACACTTTTGATTCCATTGCTTCTGCACAACGTGAACAGTTAGCCATGCAAGAAGAAGTAGAACGGCTGCAACTGGAGTTGCAAAGTACTATCGCCATGTACAAACAGGTTTGTCAAGAGCTGGTTCAAGCTCAAAACCAGGCCCTTTTACTTTCTTCTGAATCTCTTGAAGAAACTAAAAGAGTGAATGCTTCCCTAAAAAGAGAGGAGGTTTTGAGAAAGATTGCTTCTGAAGAGAAAACTAAGTATTTAAAAGTCATGAAGGAACTTGAGGAGGCGAAAAATAAGTTTTCCAAAGAGTCCTATGAAAGACAGATGGCTGAACTTGATGTCCTTAAAGAATCAATAGAGAAACAGAGAATTGTTGATACATTGCTCTCAAATGACAGGAGATACAGAAAGTACACCATGGACGACATCAAGATAGCCACAAAATTCTTCTCTGAGGATTTGATGATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGTAATCTTGATCACACACCTGTAGCTGTAAAGGTTCTGCATCAGGATGCAATCAACAAGAAAGAGGAGTTTCTAAAAGAGGTTGAGATTCTTAGTCAACTACATCATCCTAATATGGTTTTGTTACTTGGAGCCTGTCCGGAGAATGGTTGCCTAGTTTATGAATACCTGGAAAATGGAAGTCTAGAAGACTATCTTCTCAACAAAAATAGAAAACCACCACTTCCATGGTTTTTTCGATTTCGCATAGTTTTTGAAATGGCTTGCGGGCTTTCATTCTTGCATAATTCGAAGCCAGAACCGATTGTACATCGAGATATAAAACCTGGCAACATTTTGTTAGACAGAAATTATGTGAGCAAAATTTCTGATGTTGGGCTGGCTAAACTCCTTATAGAAGTTCCTCCTGACAATATTACAGAGTACCGAGAATCAGTCCTTGCCGGCACTCTGCATTACATGGACCCAGAATATCAGAGAACTGGCACTGTGCGACCGAAATCAGATGTATATGCATTTGGAGTTATAACTCTTCAATTAATAACTGGTCGCCATGCACGTGGGCTCATTATGATTGTTGAAGATGCAATTAGAAATGGCTCCCTCCGTGATATTTTAGATGCATCAGCTGGAGATTGGCCATTGGATGAGACAATGGAATTGGCTCAAGTTGCCCTTAAATGCACAGCACTTAGATGCAGAGATAGACCAGAACTTGATACTGAAGTTCTTCCACTGCTCGAAAGATTTTCTAATGCGGCAAATGCCAGTGCAAGGATAGGAAGAAATAGTGTAAGTGCACCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGGTTCACTTATGAGTACAGAGCAATCAAGGCATGGATTAGCAGACACAATGTGTCACCCATGACAAAGCTTAAACTTCAGCATTCTGTGTTGACTCCGAACCATACTCTACGTTCTGCCATTCAAGAGTGGAAGTCAGGAGTCACCTTTTGA 2349 0.4159 MIEKEQLKISLTNEIMSTPPLLRSVAVAVSGGSSKGSRRAVQWAVDNLVPQADRFILVHVIPPITSIATPTEEYIPVSEAHADVFAAYVDDVKQKSEQIFVPFKKLCGSNTMETVLLEDDNVAEALLSFISESGVQTLVLGSDSSNFITSFSSSRKLKGPGISTTSLRCAPDSCDVYVVARDRIVSKLADLSSSHSREASPSYFMSTKVNKVDNEAGIDREMSGISSSTTESKILKNFRFLSISEHSYIGLQTFSRRDSFENSINNDNPENCGDDIEMISLHTFDSIASAQREQLAMQEEVERLQLELQSTIAMYKQVCQELVQAQNQALLLSSESLEETKRVNASLKREEVLRKIASEEKTKYLKVMKELEEAKNKFSKESYERQMAELDVLKESIEKQRIVDTLLSNDRRYRKYTMDDIKIATKFFSEDLMIGEGGYGKVYKCNLDHTPVAVKVLHQDAINKKEEFLKEVEILSQLHHPNMVLLLGACPENGCLVYEYLENGSLEDYLLNKNRKPPLPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLLIEVPPDNITEYRESVLAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLIMIVEDAIRNGSLRDILDASAGDWPLDETMELAQVALKCTALRCRDRPELDTEVLPLLERFSNAANASARIGRNSVSAPSQYYCPILQEIMDDPYIAADGFTYEYRAIKAWISRHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGVTF 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05387 782 Gene3D Phosphorylase Kinase; domain 1 407 500 - -
Viun3g05387 782 SUPERFAMILY RING/U-box 705 777 - -
Viun3g05387 782 PANTHER OS02G0152300 PROTEIN 25 775 - -
Viun3g05387 782 CDD STK_N 24 181 - -
Viun3g05387 782 Pfam Protein tyrosine and serine/threonine kinase 433 684 IPR001245 GO:0004672|GO:0006468
Viun3g05387 782 Coils Coil 354 400 - -
Viun3g05387 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
Viun3g05387 782 ProSitePatterns Protein kinases ATP-binding region signature. 434 455 IPR017441 GO:0005524
Viun3g05387 782 SUPERFAMILY Protein kinase-like (PK-like) 411 683 IPR011009 -
Viun3g05387 782 Gene3D HUPs 22 179 IPR014729 -
Viun3g05387 782 CDD RING-Ubox_WDSUB1-like 712 766 - -
Viun3g05387 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 711 780 IPR013083 -
Viun3g05387 782 ProSiteProfiles Protein kinase domain profile. 428 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05387 782 Coils Coil 287 307 - -
Viun3g05387 782 SMART Ubox_2 714 776 IPR003613 GO:0004842|GO:0016567
Viun3g05387 782 SMART serkin_6 428 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05387 782 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 150 - -
Viun3g05387 782 Gene3D Transferase(Phosphotransferase) domain 1 501 710 - -
Viun3g05387 782 ProSiteProfiles U-box domain profile. 710 782 IPR003613 GO:0004842|GO:0016567
Viun3g05387 782 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 400 500 - -
Viun3g05387 782 Pfam U-box domain 712 777 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05387 Viun-Chr3 60021414 60029556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05387 9 778 Plant U-box Gene Family AT5G57035 51.576 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Viun3g05387 PK_Tyr_Ser-Thr 8.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05387 - - vun:114178082 1484.16