Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05385 ATGTACGGTGACGCCACCAACTGGGACGAAAATGCATACAGGGAAACGGTTCTCAAGGAGAGGGAAATCCAAACGCGAACGGTTTTCCGAACCGCTTGGGCTCCACCCTACAATCTCGACACTCTCCTTGTTGCCTCTAGCGACGGTTCCGTCGCATCCTACTCCATCTCTTCCTCCATCGCCGCCTCTAAGCTAAAAAACCCTTTTGGTTTTGTTAATGCGGATTCAGATAAGTTGTCGGCTGAACCTAATTGCTTCATTCAAGCGCATTATGGGCCTGCTTATGATGTCAAATTTTATGGTGACGGTGAAGATGCTTTGTTGCTGAGCTGTGGTGATGATGGTCGGATTCGAGGATGGAAATGGAAAGAATTTTCAAGCCCTCATTATTCTGTTTCTTCACAAGGAAATGATACCAAGCCTGTACTTGATGTGGTGAATCCTCAACACAAAGGTCCTTGGGGCGCACTTTCACCTATTCCTGAGAATAATGCTCTTGCTGTTAATACTCAGGAGGGATCAGTTTTTGCTGCATCTGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGCAAAGTGAAAACGGTATTCAAGGGGCACATGGAGTATTTGCATTGTATAGTTGCACGCAACTCGTCCAATCAGATCATAACAGGTTCGGAGGATGGGACAACACGAATTTGGGATTGCAAAAGTGGAAAGTGTACCCAAGTAATTGATCCGGTAAAACATTTGAAGTTGAAGGGATCTGCTGCATGGGTTGGCTGTGTTGCTTTAGATGCAAGTGAGAGTTGGTTGGCTTGCAGTAGTGGACGTAATATGTCACTTTGGAACCTGCCTGCTTCTGAATGCGTATCGAAGATTCCAACGCATGCTACTGTACAGGACATGTTATTTGACAATAATCAAATTTTGACAGTTGGTACAGATCCTCTACTCAATCGCTTTGACATGAATGGCACGATCCTTTCACAAATACAGTGTGCTCCTTCCTCATCTTTTTCTATCTCCTTACATCCTGCAGGGGTTATGGCAGTTGGAGGCTATGGTGGCCTTGTTGATGTTATTTCACAATTTGGCAGTCACATGTGCACATTTCATTTCATGGCTGGACTTGCACCTGAGGGGTCACAGTTCGATGCGAACAAATATGATTCCAAAATGAGTGACTTGCTATCTTCTGATGGACAGGATTTCTTCACATCCTATGATGAGGTTTATGAGAGTTTTGATGCTATGGGACTGCAGGAGAATCTTCTGAGGGGCATTTATGCATATGGTTTCGAAAAGCCATCAGCCATTCAGCAAAGGGGGATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCTCAGTCTGGAACTGGGAAGACAGCTACTTTCTGCTCCGGTATTCTGGAGCAACTTGACTATAGCTTGACGCAATGTCAGGCCTTGGTTTTAGCACCAACTCGTGAACTTGCTCAGCAGATTGAAAAGGTCATGCGGGCACTTGGAGATTATCTTGGTGTTAAGGTTCATGCTTGTGTGGGAGGTACCAGTGTCCGTGAAGACCAACGCATTTTATCTAGCGGTGTTCATGTCGTGGTTGGTACCCCTGGTCGTGTGTTTGATATGCTTCGTAGGCAATCACTCCAACCCGATCACATCAAGATGTTTGTATTGGATGAGGCTGATGAGATGCTTTCCCGAGGTTTTAAGGATCAGATATATGATATATTCCAGCTGTTGCCATCTAAGATTCAAGTGGGAGTTTTCTCAGCCACAATGCCTCCTGAGGCCCTTGAGATCACGAGGAAGTTCATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATAAAGCAGTTTTATGTCAATGTTGAGAAAGAGGAATGGAAGCTGGACACCCTCTGTGATCTTTATGAGACGTTAGCAATCACCCAGAGTGTCATTTTTGTGAACACCAGAAGGAAAGTTGATTGGTTGACTGACAAAATGAGAAGCCGTGACCACACTGTTTCAGCAACACATGGAGACATGGACCAGAATACCAGGGACATTATTATGCGTGAATTCCGATCTGGTTCTTCTCGTGTCTTGATTACTACTGATCTTTTGGCCCGTGGTATCGATGTCCAACAAGTGTCTCTAGTTATTAATTATGATCTCCCTACACAGCCTGAGAACTATCTGCATCGTATTGGTCGTAGTGGAAGGTTTGGCAGGAAAGGTGTGGCTATCAACTTTGTCACAAAGGATGACGACAAAATGCTGTTTGACATCCAGAAGTTTTATAACGTGGTTGTTGAGGAGCTGCCTTCAAATGTTGCTGAGCTCCTTTAA 2349 0.4487 MYGDATNWDENAYRETVLKEREIQTRTVFRTAWAPPYNLDTLLVASSDGSVASYSISSSIAASKLKNPFGFVNADSDKLSAEPNCFIQAHYGPAYDVKFYGDGEDALLLSCGDDGRIRGWKWKEFSSPHYSVSSQGNDTKPVLDVVNPQHKGPWGALSPIPENNALAVNTQEGSVFAASGDSCAYCWDVETGKVKTVFKGHMEYLHCIVARNSSNQIITGSEDGTTRIWDCKSGKCTQVIDPVKHLKLKGSAAWVGCVALDASESWLACSSGRNMSLWNLPASECVSKIPTHATVQDMLFDNNQILTVGTDPLLNRFDMNGTILSQIQCAPSSSFSISLHPAGVMAVGGYGGLVDVISQFGSHMCTFHFMAGLAPEGSQFDANKYDSKMSDLLSSDGQDFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILEQLDYSLTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLQPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDDKMLFDIQKFYNVVVEELPSNVAELL 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05385 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 198 230 - -
Viun3g05385 782 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 1 369 IPR042626 -
Viun3g05385 782 CDD SF2_C_DEAD 622 752 - -
Viun3g05385 782 Gene3D - 618 782 IPR027417 -
Viun3g05385 782 Pfam DEAD/DEAH box helicase 434 595 IPR011545 GO:0003676|GO:0005524
Viun3g05385 782 Gene3D - 148 383 IPR015943 GO:0005515
Viun3g05385 782 FunFam Eukaryotic initiation factor 4A-II 397 616 - -
Viun3g05385 782 SMART WD40_4 241 279 IPR001680 GO:0005515
Viun3g05385 782 SMART WD40_4 191 230 IPR001680 GO:0005515
Viun3g05385 782 SMART WD40_4 14 55 IPR001680 GO:0005515
Viun3g05385 782 SMART WD40_4 153 188 IPR001680 GO:0005515
Viun3g05385 782 SMART WD40_4 80 121 IPR001680 GO:0005515
Viun3g05385 782 SMART WD40_4 320 358 IPR001680 GO:0005515
Viun3g05385 782 SMART WD40_4 282 318 IPR001680 GO:0005515
Viun3g05385 782 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 409 437 IPR014014 GO:0003724
Viun3g05385 782 SMART helicmild6 662 743 IPR001650 -
Viun3g05385 782 CDD DEADc_EIF4A 413 611 - -
Viun3g05385 782 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 556 564 IPR000629 -
Viun3g05385 782 Gene3D - 5 145 IPR015943 GO:0005515
Viun3g05385 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 239 IPR001680 GO:0005515
Viun3g05385 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 763 IPR027417 -
Viun3g05385 782 Pfam WD domain, G-beta repeat 194 230 IPR001680 GO:0005515
Viun3g05385 782 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 440 610 IPR014001 -
Viun3g05385 782 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 621 782 IPR001650 -
Viun3g05385 782 SMART ultradead3 428 625 IPR014001 -
Viun3g05385 782 FunFam Eukaryotic initiation factor 4A-III 617 782 - -
Viun3g05385 782 SUPERFAMILY WD40 repeat-like 24 359 IPR036322 GO:0005515
Viun3g05385 782 Gene3D - 399 617 IPR027417 -
Viun3g05385 782 Pfam Helicase conserved C-terminal domain 635 743 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05385 Viun-Chr3 59993024 60010970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05385 370 782 Eukaryotic Initiation Factors Gene Family AT1G72730 87.440 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05385 K03257 - qsu:112002178 1310.82