Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05380 ATGGAACCTCGTGTTGGGAATAAGTTTCGCCTGGGTCGGAAGATCGGAAGCGGCTCCTTTGGGGAGATCTATTTAGGTACTAATATTCAAACAAACGAAGAGGTCGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTGTATGAGTCCAAGCTGTACAGAATCCTACAGGGAGGAACTGGAATCCCAAATGTCAGATGGTTTGGAGTCGAGGGAGATTATAATGTTTTAGTGATGGATCTGCTGGGACCCAGTCTTGAAGATCTATTCAACTTCTGTAGTAGAAAGCTATCACTGAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTCATTCATTCTAAATCATTTCTGCATCGAGATATCAAACCGGATAACTTTCTAATGGGATTAGGAAGGCGTGCAAACCAGGTTTATGCAATCGATTTTGGTTTGGCTAAGAAATACAGAGATAGTTCAACACATCAACATATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGCAGAAGAGATGATCTTGAGTCTCTTGGTTATGTTTTGATGTATTTCTTGAGAGGAAGTCTTCCTTGGCAGGGACTTAAAGCAGGAACCAAGAAACAGAAGTATGAGAAAATCAGTGAAAAGAAGGTTTCAACCTCGATTGAAGCCTTGTGTCGTGGCTATCCAACAGAATTTGCATCTTACTTTCATTACTGCCGATCATTAAGGTTTGATGATAAGCCAGATTATGCTTACCTCAAAAGGATATTTCGGGACCTTTTTATACGTGAAGGATTCCAGTTCGATTATGTCTTTGATTGGACCATTTTGAAGTATCAGCAATCACAGTTAGCCACTCCTCCAACACGAGCCATTGGTCCTAGTGCTGGAACCAGTTCTGGAATGCCCCCAGCTGTTACTAATGCTGATAGGCATACAGGAGGGGAAGAAGGGCGACCTCCTGCTGTGGTTTCAGTGGATTCCTCAAGGCGCAGAATGTCAGGGCCCATTTTAAATACTTTATCAAGTGCCAATGTCTTGGGTCAGTCAAGTGGATCATCGAGGCGAGTTGCTGTTTCTGGTAGTCGTGATGCATTTGTTGGTACCGAGTCGGATATTCGTACTCGCACTGCTGAAGCTAGCCCTGGAGTAGCGCACAGAGGTTTGAGTGGGCAAAGAAGTTCACCAATTGGATCTTCTGATCCCAAGAGAGTTGTAGCATCCGGGAGAAATGTGAAAAATTATGACTCTGTACTCAGAGGAATGGAAGGTTTGCAGTTAGAGAATGAAGAGAGGACCCATTATTAA 1356 0.4292 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRAIGPSAGTSSGMPPAVTNADRHTGGEEGRPPAVVSVDSSRRRMSGPILNTLSSANVLGQSSGSSRRVAVSGSRDAFVGTESDIRTRTAEASPGVAHRGLSGQRSSPIGSSDPKRVVASGRNVKNYDSVLRGMEGLQLENEERTHY 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05380 451 CDD STKc_CK1_delta_epsilon 8 282 - -
Viun3g05380 451 PANTHER CASEIN KINASE-RELATED 9 364 - -
Viun3g05380 451 Gene3D Transferase(Phosphotransferase) domain 1 1 311 - -
Viun3g05380 451 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Viun3g05380 451 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05380 451 MobiDBLite consensus disorder prediction 303 322 - -
Viun3g05380 451 FunFam Putative Casein kinase I 1 85 - -
Viun3g05380 451 MobiDBLite consensus disorder prediction 386 425 - -
Viun3g05380 451 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Viun3g05380 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Viun3g05380 451 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05380 451 MobiDBLite consensus disorder prediction 303 346 - -
Viun3g05380 451 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05380 451 FunFam Casein kinase I isoform delta-like 1 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05380 Viun-Chr3 59968298 59973486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05380 7 223 EF-hand Containing Proteins AT2G17890 26.667 1.25e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Viun3g05380 Pkinase 9.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05380 K02218 - gmx:100811567 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05380 3 59968298 59973486 Viun3g05380 3 59968298 59973486 ECH
Viun3g05380 3 59968298 59973486 Viun9g00422 9 3029740 3038249 PCT