Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05371 ATGGATGCTGTGTTTGCCCTCCCTGAAGCCCCCAGAGATGATTTTCTCCGTTCTCTCATCCAATCTTTTGGTGCCACTTACGTTTGTCTATGGCGGCATCACTCCCATTTATCAAATCGTTTGTTCTTCCTTGATGGTTTCTACAATGGAGGGAACAACCAACCAACCTCTTCTCAAACCCTTTTTCATCAGTATCGGGCTTTAACGTTTGATGTCAGTGATGAATGTGTTCCTGGAGTTGCTTTCAGGAATCAACTTCCCTACATACACCTCAAACTCTCGGATCTCCTACCACTCACATCCACCCAAATTCAAGCACAATTCTTTCTGGAAGCTAGGATTCAGATGGCTGTTTTCATGGGGTGCAAAACTGGAGAAATCGAACTTGGCTTCTCCAACATTCCTCAAGCTGACATTGAGACAGCACTTAAGAATTTATTCCCCGAAGATTTCTATATACGTTCCCAATCAATTGATCAGAATCCATATTCATCTTCTTTCATAAAATCATCAACTACCTTTAATCAATCACTCAATATTCCGAGAACTTCCCACTCCAACTTTGGTGTGGCTCCCACACAATCTAGTCCTCACCAACACACTATCCAACCATTACCAACACCAGAAGATGAACATGAAGAAATAGTAAGAACATTAATCCAAGTCATGTCTTCAACTTCTGATCAGCAGTATCAACCTCCTCCAATGTTGCCTCATAATTCTGTAACACACCCTGGAACTGCCGATTTCGTGAGATATAGATCAGATTCAAATATAAAACCACAAATGGAGTCCAATTTTAACAGGCAAAACCTGCAGAATACATCATTGCTTGAAAACTTAAATACAAAGAGAATGAGAGAACGTGATACTGTTAAAGCAACCCATCCCATTAGTTCCCCCCAGAAGTACTATCACACGATATCGGAAAGAAAACGTCGTGAAAAACTCAGCGAGTGTTTTCAGGAACTCAGCGCACTTCTTCCTCCGGGAACAAAGAAAAACAAAAGGTCGATACTTGCAGCAGCAAAGGAGACAATGATATCTTTGATGGTTGAAATTGAAAAGCTTAAGGTGAGAAATGAGCAGCTGTTAAGAGTTTTGTCAGGCAAAGAAGTTGGCAGTAGTAGGGAGGAAAACAGTGACAGGTCCTGTAATGAAAGATTGAAAGTTCGGGTTTTGCATGCATCAGAATCAAGTTCATCGAAAGAGCAAATGGTGGATTTGGAAGTGACGATGAGAGAACAAAACTGTGAAGTTAATGTATTGATTCGCATATGGGAATTCTTAGAAAGGGTTCAGAACGTAACCTTGATTTCCACGAACACAAACCTCCATGTTACGGAAGGAGGGACAACCATTAATGTATTAACCTTCAGGCTGAGGATTATTGAGGGTAGTGAATGGGACGAGGTTGGCTTCGAGGAAGCAGTGAGAAGAGTGGTTGCTGACGTAACACATCGATCGTGA 1470 0.4156 MDAVFALPEAPRDDFLRSLIQSFGATYVCLWRHHSHLSNRLFFLDGFYNGGNNQPTSSQTLFHQYRALTFDVSDECVPGVAFRNQLPYIHLKLSDLLPLTSTQIQAQFFLEARIQMAVFMGCKTGEIELGFSNIPQADIETALKNLFPEDFYIRSQSIDQNPYSSSFIKSSTTFNQSLNIPRTSHSNFGVAPTQSSPHQHTIQPLPTPEDEHEEIVRTLIQVMSSTSDQQYQPPPMLPHNSVTHPGTADFVRYRSDSNIKPQMESNFNRQNLQNTSLLENLNTKRMRERDTVKATHPISSPQKYYHTISERKRREKLSECFQELSALLPPGTKKNKRSILAAAKETMISLMVEIEKLKVRNEQLLRVLSGKEVGSSREENSDRSCNERLKVRVLHASESSSSKEQMVDLEVTMREQNCEVNVLIRIWEFLERVQNVTLISTNTNLHVTEGGTTINVLTFRLRIIEGSEWDEVGFEEAVRRVVADVTHRS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05371 489 Gene3D - 300 372 IPR036638 GO:0046983
Viun3g05371 489 Pfam Helix-loop-helix DNA-binding domain 305 347 IPR011598 GO:0046983
Viun3g05371 489 SMART finulus 307 356 IPR011598 GO:0046983
Viun3g05371 489 MobiDBLite consensus disorder prediction 228 247 - -
Viun3g05371 489 MobiDBLite consensus disorder prediction 188 203 - -
Viun3g05371 489 Coils Coil 340 360 - -
Viun3g05371 489 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 301 350 IPR011598 GO:0046983
Viun3g05371 489 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 301 366 IPR036638 GO:0046983
Viun3g05371 489 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 101 484 IPR044658 -
Viun3g05371 489 MobiDBLite consensus disorder prediction 188 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05371 Viun-Chr3 59913059 59916242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05371 1 487 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 34.615 8.98e-75 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g05371 HLH 5.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05371 - - vum:124823621 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05371 3 59913059 59916242 Viun3g05371 3 59913059 59916242 ECH
Viun3g05371 3 59913059 59916242 Viun9g00411 9 2952462 2956689 PCT