Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05352 ATGGCTCCTAGAATCCTTCTATGCGGCGACGTTTTAGGCCGCCTCAGCCAACTCTTCAAGCGCGTCTCTTCAGTGAGCAAATCTGCAGGTCCATTCGACGCGCTTTTGTGCGTAGGCCAGTTTTTCCCGGACTCACCGGAGCAACTGGAAGAATTCACGGCCTACATTGAAGGTGGATCACCGATTCCGCTTCCGACTTACTTCGTCGGCGATTACGGCGTCGCCGCCCCTAAATTTCTCTTGCAAGCTTCCAAGGACTCCGCCAACCGCGGGTTCATGATGGACGGCTTCAAGGTTTGCCACAACTTGTATTGGTTGAAAGGCAGTGGCAAATTCCCCCTCTTCGGGTTATCCGTGGCCTATTTATCTGGTAGGAAGTCATCCAGTGTTCAACAGTTTGGAACTTACAGCGAAGATGATGTTGATGCTTTGCGAGCTATTGCAGAGGAACCAGAAATTGTTGATCTGTTCTTGACTAATGAATGGCCAAGTGGCGTCACCAATGGAGCAGCTGCTTCGGACATTCCTGCTGGAGCCTCGGATGTTGTAGGCAGTGATTCAACCATATCGGAGTTAGTACAGGAGATCAAGCCTCGTTATCACATTGCAGGCACGAAAGGTATATACTATGCCCGTGAACCATATACCAATGTTGATGCTGTGCATATCACCCGTTTCATAGGGCTTGCATCTGTTGGAAATAGAAATAAACAGAAATTTATTCATGCAATTTCCCCCACGCCTGCTTCGACCATGTCTTCAACTGAGATTGCTATGAAAACCACAAGTACCACTTTATCACCTTACACATTTGTGGAGAAAAGAACTTCTCCTGTGGATTCCACGAAGAGATCCAGTGATTCTATCTCTGAGTCTCAATATTGGAGATATGATGTTTCTCAAAAGCGACAAAAACATGAAACTGGACAAGCTGATAAGCTGTGTTTCAAATTTGTCTCTTCTGGATCTTGTCCACATGGAGAGAAGTGCCATTTTCGACATGATACAGATGCAAGGGAGCAGTGTAGGAGAGGTGTTTGTTTTGATTTATTGAACAAGGGAAAATGTGAAAGGGGCCCAGACTGCAACTTTAAGCACAACTTGCAGGATGGAGGTGACAGTCATCCTTCTAGGAGGCCCGGATCTGGCAGGTCAAAAGAGTGTTGGTTTTGCTTGTCAAGCCCAAATGTGGAGACACATTTAATCGTTAGCATTGGGGAGAATTATTACTTGGCACTGGCTAAAGGTCCACTTGTTGAGGACCATGCACTGATAATACCCGTTGAGCACATGCCTAGTACCTTATCTATGTCTTCTGAATCTGAAATTGAGCTCTCTAGGTTTCAGAACAGTCTCAAGAATTACTGCAGGCTCCAAGAAAAGGAAGTGATATTTTTTGAGTGGGTCTCCATTCGTGGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCAGTTATGGCTGAAAAAGTTTTCAATTTAGCTGCACAAAAGTTGGGATTTGAATTTGTGGCCAAGACATTTGATAGCATTTCTGATGGAAGGAAGTTCTTGAAGACTCAAATTGATGGGGGTTCAAGCTTGTTCTATGCTCAAGTTCCGGGAGGCAAAATTCTGCTGCATCATGTTGAAAAGAACGAGAAATTTCCTGCCCAATTCGGCCGTGAGGTCATGGCTGGGTTGCTCAATATGGCAGATAATGCAGATTGGAGGAATCACAAACATAGCAAGGATGAGGAAACGAAAATTGTTAAAAATTTCAAGAGCCGATTTCAAGAATATGATCCAAACTGCTAA 1806 0.4496 MAPRILLCGDVLGRLSQLFKRVSSVSKSAGPFDALLCVGQFFPDSPEQLEEFTAYIEGGSPIPLPTYFVGDYGVAAPKFLLQASKDSANRGFMMDGFKVCHNLYWLKGSGKFPLFGLSVAYLSGRKSSSVQQFGTYSEDDVDALRAIAEEPEIVDLFLTNEWPSGVTNGAAASDIPAGASDVVGSDSTISELVQEIKPRYHIAGTKGIYYAREPYTNVDAVHITRFIGLASVGNRNKQKFIHAISPTPASTMSSTEIAMKTTSTTLSPYTFVEKRTSPVDSTKRSSDSISESQYWRYDVSQKRQKHETGQADKLCFKFVSSGSCPHGEKCHFRHDTDAREQCRRGVCFDLLNKGKCERGPDCNFKHNLQDGGDSHPSRRPGSGRSKECWFCLSSPNVETHLIVSIGENYYLALAKGPLVEDHALIIPVEHMPSTLSMSSESEIELSRFQNSLKNYCRLQEKEVIFFEWVSIRGTHANLQAIPIPSSKAVMAEKVFNLAAQKLGFEFVAKTFDSISDGRKFLKTQIDGGSSLFYAQVPGGKILLHHVEKNEKFPAQFGREVMAGLLNMADNADWRNHKHSKDEETKIVKNFKSRFQEYDPNC 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05352 601 CDD MPP_CWF19_N 6 232 - -
Viun3g05352 601 SUPERFAMILY HIT-like 386 452 IPR036265 -
Viun3g05352 601 ProSiteProfiles Zinc finger C3H1-type profile. 341 369 IPR000571 GO:0046872
Viun3g05352 601 Pfam Protein similar to CwfJ C-terminus 2 520 598 IPR006767 -
Viun3g05352 601 Pfam Protein similar to CwfJ C-terminus 1 384 495 IPR006768 -
Viun3g05352 601 SUPERFAMILY CCCH zinc finger 312 336 IPR036855 GO:0046872
Viun3g05352 601 Gene3D - 298 371 - -
Viun3g05352 601 SMART c3hfinal6 311 336 IPR000571 GO:0046872
Viun3g05352 601 SMART c3hfinal6 343 368 IPR000571 GO:0046872
Viun3g05352 601 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 600 IPR040194 -
Viun3g05352 601 ProSiteProfiles Zinc finger C3H1-type profile. 309 337 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05352 Viun-Chr3 59815754 59821517 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun3g05352 CwfJ_C_1 5.3e-36 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05352 K24939 - gmx:100782106 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05352 3 59815754 59821517 Viun3g05352 3 59815754 59821517 ECH