Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05345 ATGATTCCAGCCTATCGCCACTCTTCTGTGATTCCTCTAGATCTTAATGAAGATCAAAACCATGAGCTCTTCACTCCCACTCATCAAACTTACCCTTCTTTTTCTTCTCTATCTTCCTCATATCCCGTCCTCTTCAACCCTCCAGATCAAGAAGCTGGATCACACTACTGGGAACCAACAAAGCACTTATCAGGTCATGAAGAGGCTGAGAAGATTAACCCTACCGTGGGATCATGGGATCACTCGGTGGCAGAAAGTGAGCTCAAGGTGACAGTTTGGAAGAAGAAAGAGAGGAGTGAAGATCACGAAGCAGCTGCTGAGGATGGTTCGGTGAAGTTGATGTCTTCAAAGATGAGAATGATGCAGAAGATGATGGTGCCGGATCAAACTGGTGCATATATAGAAGACAGCACTGTGCATAAGTTTGAAGATCAGAAGCAACCATTGTCACCGCTTGGAACTGATAACAGCAGCAGCAACAACTGTTCAAACCACAGTAACAACAACACTGTTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTTTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTATGCAACGCCTGTGGAATTCGACAGAGGAAGGCGAGACGAGCCATGGCAGCTGCAGCATCGGGAAATGGAACAGTGATTTTGGAAACTGAGAAATCTGTGAAGGGAAACAAGTTACAGAAGAAAGAGAAGAAGGCAAGAAGTGAGGGTGCAGCACAGATGAAAAAGAAGCGCAAGCATGGAGTTGGAGCAAAGGCATCTCAAAGCAGAAACAAGTTTGGTTTTGAGGATTTGACATTACGCCTAAGAAAGAGCTTGGCTATGCATCAAGTTTTCCCCCAGGACGAGAAGGAGGCTGCCATTCTTCTCATGGCTTTATCATATGGCCTTGTCCACGGATGA 924 0.4643 MIPAYRHSSVIPLDLNEDQNHELFTPTHQTYPSFSSLSSSYPVLFNPPDQEAGSHYWEPTKHLSGHEEAEKINPTVGSWDHSVAESELKVTVWKKKERSEDHEAAAEDGSVKLMSSKMRMMQKMMVPDQTGAYIEDSTVHKFEDQKQPLSPLGTDNSSSNNCSNHSNNNTVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAASGNGTVILETEKSVKGNKLQKKEKKARSEGAAQMKKKRKHGVGAKASQSRNKFGFEDLTLRLRKSLAMHQVFPQDEKEAAILLMALSYGLVHG 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05345 307 Gene3D - 168 265 IPR013088 GO:0006355|GO:0008270
Viun3g05345 307 ProSiteProfiles GATA-type zinc finger domain profile. 168 204 IPR000679 GO:0006355|GO:0043565
Viun3g05345 307 FunFam GATA transcription factor 21 168 256 - -
Viun3g05345 307 MobiDBLite consensus disorder prediction 233 262 - -
Viun3g05345 307 Pfam GATA zinc finger 174 207 IPR000679 GO:0006355|GO:0043565
Viun3g05345 307 CDD ZnF_GATA 173 201 IPR000679 GO:0006355|GO:0043565
Viun3g05345 307 ProSitePatterns GATA-type zinc finger domain. 174 199 IPR000679 GO:0006355|GO:0043565
Viun3g05345 307 SMART GATA_3 168 219 IPR000679 GO:0006355|GO:0043565
Viun3g05345 307 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 15 307 - -
Viun3g05345 307 MobiDBLite consensus disorder prediction 245 259 - -
Viun3g05345 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 167 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05345 Viun-Chr3 59757412 59759225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05345 85 307 C2C2-Gata Transcription Factor Family AT4G26150 39.130 4.82e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun3g05345 GATA 3.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05345 - - gmx:100810090 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05345 3 59757412 59759225 Viun3g05345 3 59757412 59759225 ECH
Viun3g05345 3 59757412 59759225 Viun9g00400 9 2800578 2802261 PCT