Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05337 ATGACATTATTCACCAACACTGTTGAATCAGAATGCTTTCTTCTGCCCCAAATAATGTCTCGCAGAGTACTTCAAGTGACTGCACAGGAACCTCCTTCATCCTCTGCAGCTTTGAAAACCTCCGCTTCACGCTACGACCCTGGAGTGTTCTTCTTCCTTGGGGGGACTGTGTTGCTCATCATTGTACTCATTCTTCTGTTTATATTCTGGAGGCGCACTAAAGGGCCAGCGAAGGTGACTGAGAACACAACTCTAACATGTCAGCAACATGGGAAATATATTGAACCCTCTGAGGTGATGAAGATGATGGCCCCAAATATTCAACCAGGACAGATGGAGTTCATTAGTGGAAACCTTCGGACAATTAGCCACTTTGACTTCCGGACATTGAAGAGAGCCACTAAGAATTTCCACCCTCGAAATCTGCTTGGAAGTGGTGGATTTGGGCCTGTCTATCAGGGCAAGTTGGCAGATGGAAGACTTGTTGCAGTAAAGACATTGTCTCTTGATAAGTCTCAACAAGGAGAAAAAGAATTTCTGGCAGAAGTGAGAATGATCACAAGCATCCAACACAAGAATCTGGTTCGCCTTCTCGGATGCTGCACAGATGGGCCTCAAAAGATACTGGTGTACGAATATATGAAGAACAGAAGTTTGGACCTCATAATTTATGGAGAGAGTGATCAATTTCTGAATTGGAACACTAGATTCCAAATTATTCTTGGTGTAGCACGGGGATTGCAATACCTCCATGAGGATTCACATTTAAGAATTGTTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATGAAAAGTTTCAGCCTAGGATTGGAGACTTTGGGTTAGCTAGGTTCTTCCCTGAAGACCAAGCTTATCTTAGCACACAGTTCGCAGGAACATTAGGTTATACCGCTCCTGAGTATGCCATTAGAGGAGAGTTGTCCGAAAAGGCCGACATCTATAGTTTCGGAGTTCTTGTGCTTGAAATCATCAGTTGCAGGAAAAACACTGACCTTACTTTACCATCAGAAATGCAGTACCTTCCTGAATATGCATGGAAACTTTACGAGAAATCAATGTTGATGGAAATAGTGGATCCAAGGCTGCGACAACATGGCATGGAGGAAAAGGATGTTATGCAAGCATTTCACGTGGCCTTATCGTGCCTTCAGCCACATGCGGATCTGAGACCTGCAATGTCAGAAATCGTAGCATTGCTGACATTCAAAGTTGAAATGGTTACCAAGCCGATCAGGCCAACCTTCGTTCATAGGAGACGCGTAATGGATGATGAGAACCACTCTTGGGGAGCCATATCCTCCGGGACTTCCACAACTGCAGTGGCATCATCATCATCGTAG 1365 0.444 MTLFTNTVESECFLLPQIMSRRVLQVTAQEPPSSSAALKTSASRYDPGVFFFLGGTVLLIIVLILLFIFWRRTKGPAKVTENTTLTCQQHGKYIEPSEVMKMMAPNIQPGQMEFISGNLRTISHFDFRTLKRATKNFHPRNLLGSGGFGPVYQGKLADGRLVAVKTLSLDKSQQGEKEFLAEVRMITSIQHKNLVRLLGCCTDGPQKILVYEYMKNRSLDLIIYGESDQFLNWNTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIISCRKNTDLTLPSEMQYLPEYAWKLYEKSMLMEIVDPRLRQHGMEEKDVMQAFHVALSCLQPHADLRPAMSEIVALLTFKVEMVTKPIRPTFVHRRRVMDDENHSWGAISSGTSTTAVASSSS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05337 454 Gene3D Phosphorylase Kinase; domain 1 110 213 - -
Viun3g05337 454 CDD STKc_IRAK 143 409 - -
Viun3g05337 454 FunFam Cysteine-rich receptor-like protein kinase 10 101 213 - -
Viun3g05337 454 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 214 418 - -
Viun3g05337 454 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 38 439 - -
Viun3g05337 454 SUPERFAMILY Protein kinase-like (PK-like) 117 411 IPR011009 -
Viun3g05337 454 ProSiteProfiles Protein kinase domain profile. 137 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05337 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Viun3g05337 454 SMART serkin_6 137 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05337 454 Pfam Protein tyrosine and serine/threonine kinase 141 407 IPR001245 GO:0004672|GO:0006468
Viun3g05337 454 Gene3D Transferase(Phosphotransferase) domain 1 214 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05337 Viun-Chr3 59704245 59707458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05337 125 424 Receptor kinase-like Gene Family AT1G56120 49.000 3.49e-99 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g05337 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05337 - - gmx:100812302 716.457