Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05336 ATGACATTATTCACCAACACTGTTGAATCAGAATGCTTTCTTCTGCCCCAAATAATGTCTCGCAGAGTACTTCAAGTGACTGCACAGGAACCTCCTTCATCCTCTGCAGCTTTGAAAACCTCCGCTTCACGCTACGACCCTGGAGTGTTCTTCTTCCTTGGGGGGACTGTGTTGCTCATCATTGTACTCATTCTTCTGTTTATATTCTGGAGGCGCACTAAAGGGCCAGCGAAGGTGACTGAGAACACAACTCTAACATGTCAGCAACATGGGAAATATATTGAACCCTCTGAGGTGATGAAGATGATGGCCCCAAATATTCAACCAGGACAGATGGAGTTCATTAGTGGAAACCTTCGGACAATTAGCCACTTTGACTTCCGGACATTGAAGAGAGCCACTAAGAATTTCCACCCTCGAAATCTGCTTGGAAGTGGTGGATTTGGGCCTGTCTATCAGGGCAAGTTGGCAGATGGAAGACTTGTTGCAGTAAAGACATTGTCTCTTGATAAGTCTCAACAAGGAGAAAAAGAATTTCTGGCAGAAGTGAGAATGATCACAAGCATCCAACACAAGAATCTGGTTCGCCTTCTCGGATGCTGCACAGATGGGCCTCAAAAGATACTGGTGTACGAATATATGAAGAACAGAAGTTTGGACCTCATAATTTATGAGAGTGATCAATTTCTGAATTGGAACACTAGATTCCAAATTATTCTTGGTGTAGCACGGGGATTGCAATACCTCCATGAGGATTCACATTTAAGAATTGTTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATGAAAAGTTTCAGCCTAGGATTGGAGACTTTGGGTTAGCTAGGTTCTTCCCTGAAGACCAAGCTTATCTTAGCACACAGTTCGCAGGAACATTAGGTTATACCGCTCCTGAGTATGCCATTAGAGGAGAGTTGTCCGAAAAGGCCGACATCTATAGTTTCGGAGTTCTTGTGCTTGAAATCATCAGTTGCAGGAAAAACACTGACCTTACTTTACCATCAGAAATGCAGTACCTTCCTGAATATGCATGGAAACTTTACGAGAAATCAATGTTGATGGAAATAGTGGATCCAAGGCTGCGACAACATGGCATGGAGGAAAAGGATGTTATGCAAGCATTTCACGTGGCCTTATCGTGCCTTCAGCCACATGCGGATCTGAGACCTGCAATGTCAGAAATCGTAGCATTGCTGACATTCAAAGTTGAAATGGTTACCAAGCCGATCAGGCCAACCTTCGTTCATAGGAGACGCGTAATGGATGATGAGAACCACTCTTGGGGAGCCATATCCTCCGGGACTTCCACAACTGCAGTGGCATCATCATCATCGTAG 1362 0.4435 MTLFTNTVESECFLLPQIMSRRVLQVTAQEPPSSSAALKTSASRYDPGVFFFLGGTVLLIIVLILLFIFWRRTKGPAKVTENTTLTCQQHGKYIEPSEVMKMMAPNIQPGQMEFISGNLRTISHFDFRTLKRATKNFHPRNLLGSGGFGPVYQGKLADGRLVAVKTLSLDKSQQGEKEFLAEVRMITSIQHKNLVRLLGCCTDGPQKILVYEYMKNRSLDLIIYESDQFLNWNTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIISCRKNTDLTLPSEMQYLPEYAWKLYEKSMLMEIVDPRLRQHGMEEKDVMQAFHVALSCLQPHADLRPAMSEIVALLTFKVEMVTKPIRPTFVHRRRVMDDENHSWGAISSGTSTTAVASSSS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05336 453 Gene3D Phosphorylase Kinase; domain 1 110 213 - -
Viun3g05336 453 Pfam Protein tyrosine and serine/threonine kinase 141 406 IPR001245 GO:0004672|GO:0006468
Viun3g05336 453 SMART serkin_6 137 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05336 453 CDD STKc_IRAK 143 408 - -
Viun3g05336 453 SUPERFAMILY Protein kinase-like (PK-like) 117 410 IPR011009 -
Viun3g05336 453 FunFam Cysteine-rich receptor-like protein kinase 10 101 213 - -
Viun3g05336 453 ProSiteProfiles Protein kinase domain profile. 137 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05336 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Viun3g05336 453 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 214 417 - -
Viun3g05336 453 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 38 438 - -
Viun3g05336 453 Gene3D Transferase(Phosphotransferase) domain 1 214 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05336 Viun-Chr3 59704244 59707461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05336 125 423 Receptor kinase-like Gene Family AT1G56120 48.667 9.91e-97 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun3g05336 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05336 - - gmx:100812302 709.523