Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05334 ATGGAAGACGCTGAAGAATGCATCACTGGGCTTTGTTTGGGCCTTGGAATGGGAGGGTATGTCCCAAAAAAGGGTAAGCAGAAAGAGAACAGACCCGTGCTAGACTTAGCTTTTGAGCTTTGTCCTAAAGGGGAAGCCATTAACTTGAATCATGATAAGGTAGAGAGCACTGATTCTGATAACAGCAACACCAACAACAACAACAAAGGATGCAGAAAAAAACTCAGGCTTTCCAAGGACCAATCATCCATGCTTGAGAACAGCTTCAAACTTCATACCACTCTTAATCCGGTCCAGAAACAAGCACTGGCTGATCAATTGAATTTAACGACAAGACAAGTGGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACGAAACTGAAGCAGACAGAAGTGGACCGTGAGTGGTTGAAAAAACAGTGTCAAAATCTAAGCGATGAGAACAAAAGATTGAAGAAGGAATTGCAGGAACTACGTGCACTTAAGGTTGGACCATCATCGCCTCTCTGCATTCAACTATCCAAAACGGCAACTCTGACTATGTGTTCTTCGTGCGACAAACTAGTAAAACTGAATGAAGGAAACAACAATATAGGGTTAGAGGGTACAAATTGA 615 0.4244 MEDAEECITGLCLGLGMGGYVPKKGKQKENRPVLDLAFELCPKGEAINLNHDKVESTDSDNSNTNNNNKGCRKKLRLSKDQSSMLENSFKLHTTLNPVQKQALADQLNLTTRQVEVWFQNRRARTKLKQTEVDREWLKKQCQNLSDENKRLKKELQELRALKVGPSSPLCIQLSKTATLTMCSSCDKLVKLNEGNNNIGLEGTN 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05334 204 Pfam Homeodomain 72 126 IPR001356 GO:0003677
Viun3g05334 204 CDD homeodomain 72 129 IPR001356 GO:0003677
Viun3g05334 204 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677
Viun3g05334 204 SMART HOX_1 70 132 IPR001356 GO:0003677
Viun3g05334 204 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
Viun3g05334 204 SMART halz 128 173 IPR003106 GO:0006355|GO:0043565
Viun3g05334 204 SUPERFAMILY Homeodomain-like 56 129 IPR009057 -
Viun3g05334 204 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 23 190 - -
Viun3g05334 204 Coils Coil 120 161 - -
Viun3g05334 204 Gene3D - 76 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05334 Viun-Chr3 59675498 59676821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05334 60 187 Homeobox Transcription Factor Family AT3G60390 62.500 2.22e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Viun3g05334 Homeodomain 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05334 K09338 - gmx:100812222 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05334 3 59675498 59676821 Viun9g00390 9 2767326 2768842 PCT