Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05322 ATGGGGAACTGTTGGAGTTTTCAATCATCTTCTGCTGTCGATCACCGCAACTCCATTTCTGCCCCCAACCCCAACAATCAATCAGGGAGTATTCAGTTTTCTGCCGGTACAAGCAACAGAAGATTAATACAGAGCAGTAATTCTACTTCTCTTGGGCAGAGCAGCCACTCTGGAGGATTCAGCAGGTTCTTTGGAGCAAGTAGTAGTAATAATTACTCAACAGGCAATAACACTAGCACATCCTTTTGGGGCTCTGAGAATAGCCAAGCCTCTCGAGGGAGGGACGAAGAAGAGAGGGGGCAAATCTTGGATGTTGCAGATTTGAGGGCATTTACCTTGGCAGAACTGAAAGCAGCCACCCAAAATTTCAGACATGGCAGTCTGTTAGGAGAGGGGGGATTCGGTAAAGTATACAAGGGTGTCATTAGAAGTGAGGGGTTGCCTATTGCCATCAAGAAGTTGAATTCCGAAAGCAAGCAAGGAATTGCGGAATGGCAGTCAGAGGTTAATTTCTTAGGGAGGCTTTCTCATCCCAATCTTGTTAAATTGTTGGGATTTGGTAGGGAAGAGAGTAAACTGTTTCTGGTGTATGAATTTATGCCTTGTGGGAGCTTGGATAACCACCTATTTGGAAGAGGAGCAAATGTTCGGCCACTTTCTTGGGACACAAGGCTAACAATTATGATTGGAGCAGCTAGGGGGCTTCATTTCCTTCACAGCTTGGAGAATGCCATTATATACAGAGATTTTAAACCCTCAAATATTCTCCTCGACTCAACGTATGCGGCAAAGTTATCAGACTTTGGCTTAGCGAAATCTATGACTTCGCCTGATCAGAGTCACGTATCAACACATGTTGTGGGAACACACGGCTATGCTGCTCCTGAGTACATTGCAACAGGTCATTTGTACGTGAAAAGTGATGTGTATGGATTTGGAATATTTTTGGTGGAGTTGCTGACTGGGAAGAGGATTACTGGTATAATGCAACTATGTGAGGAAACGTCGTTGAGGGATTGGGTGAAAAGAAATCTTGTAAACAGAGGGTATATAAGAAGCACCATGGATGCAAAGTTGGAAGGGAAGTATCCACCAAACTTAGCTTTAGAAACGGCTCAACTAGCTCTCAAATGCATCCAAATAGAGCCCAAAGTAAGGCCATCGATGAAAGAAGTTCTTGAAAGATTGGAACAGATTGAAGCAGCCAATGAAAAACCAGCTGATAACAGAAGACGGGTTAATCGTTCTCGTCTTGTTCAACAACATGGCCCTCCAGATGGTGGCTAA 1287 0.4413 MGNCWSFQSSSAVDHRNSISAPNPNNQSGSIQFSAGTSNRRLIQSSNSTSLGQSSHSGGFSRFFGASSSNNYSTGNNTSTSFWGSENSQASRGRDEEERGQILDVADLRAFTLAELKAATQNFRHGSLLGEGGFGKVYKGVIRSEGLPIAIKKLNSESKQGIAEWQSEVNFLGRLSHPNLVKLLGFGREESKLFLVYEFMPCGSLDNHLFGRGANVRPLSWDTRLTIMIGAARGLHFLHSLENAIIYRDFKPSNILLDSTYAAKLSDFGLAKSMTSPDQSHVSTHVVGTHGYAAPEYIATGHLYVKSDVYGFGIFLVELLTGKRITGIMQLCEETSLRDWVKRNLVNRGYIRSTMDAKLEGKYPPNLALETAQLALKCIQIEPKVRPSMKEVLERLEQIEAANEKPADNRRRVNRSRLVQQHGPPDGG 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05322 428 FunFam receptor-like protein kinase FERONIA 86 199 - -
Viun3g05322 428 MobiDBLite consensus disorder prediction 403 428 - -
Viun3g05322 428 MobiDBLite consensus disorder prediction 75 89 - -
Viun3g05322 428 Gene3D Phosphorylase Kinase; domain 1 107 199 - -
Viun3g05322 428 ProSitePatterns Protein kinases ATP-binding region signature. 129 153 IPR017441 GO:0005524
Viun3g05322 428 ProSiteProfiles Protein kinase domain profile. 123 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05322 428 PANTHER OS01G0588500 PROTEIN-RELATED 74 400 - -
Viun3g05322 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Viun3g05322 428 Gene3D Transferase(Phosphotransferase) domain 1 200 422 - -
Viun3g05322 428 MobiDBLite consensus disorder prediction 15 37 - -
Viun3g05322 428 SUPERFAMILY Protein kinase-like (PK-like) 108 402 IPR011009 -
Viun3g05322 428 MobiDBLite consensus disorder prediction 75 98 - -
Viun3g05322 428 Pfam Protein kinase domain 125 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05322 428 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 200 410 - -
Viun3g05322 428 CDD STKc_IRAK 129 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05322 Viun-Chr3 59630363 59632985 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05322 100 415 Receptor kinase-like Gene Family AT4G02010 43.827 1.19e-80 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g05322 Pkinase 6.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05322 - - pvu:PHAVU_003G139200g 706.057