Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05321 ATGGGGAACTGTTGCAGTCATTCATCTAGTTCAAATGGTGATGATCATCCCAACGCGAAGAACCATTTAGGGAGGACTGAATTCTCTGCTGGTCTCAGCAAAATAAGACTAATACAGAATGACAATTCTACTTCTGGTGGTGGGTGTAGCAGCCAATTTGGAGGAAGCAGTAGTCTGTTTGGGCCAAGTAGTGGCAATAATCACACATCAGGGAATAACACTAGCACGACATTTTGGGGCTCTGATAATAGCCACACCTCTGGAGTCAGAGATGGAGAGGAATTTTCTCAAGGTGAGATCTTGAATGCTCCAAACTCGAGAGTATTTACTTTTGCAGAACTGAGAGCTGCCACAAAAAATTTCAGAGCTGACAGTGTGATAGGAGAGGGGGGTTTTGGTAGAGTATACAAGGGTTTCATTAGAGGTGAGGGATTGACCATTGCGATCAAGAAATGGAATCCCGGAAGCTTGCAAGGAGTTGCGGAATGGCAGTCAGAGGTGAATTTCTTAGGGAGGCTTTCTCATCCCAACCTTGTTAAGTTGTTGGGATTTGGGCGAGAGAACAGTGAGCTGTTCCTGGTGTATGAATTCATGCATCGTGGCACCTTGGATAACCACCTATTTGGAAGAGGTGCAAATGTTCGACCACTTTCTTGGGATACAAGGCTGAAGGTGATGATTGACGCAGCTAGGGGACTCAATTTCCTTCATTCCATGGAAATGAAAATCGTACACAGAGATTTTAAGCCCTCAAATATACTACTTGACGAGACATTCACGGCAAAGTTATCAGACTTTGGGTTAGCCAAATGTTTTTCTTCGCTTGATCAGACTCACGTAACAACACGAGTTGTGGGAACAGGAGGCTATGCCGCTCCTGAGTATGTAGCAACAGGTCGTTTGAAAGTGAAAAGTGATGTGTATGCATTTGGAATTGTTGTGATGGAGGTGCTGACAGGGAAAAGAATGCAAGATATAAGGCGATTGCTGAAGCAAAAGTCCTTGAGTGATTGGGTGAAATCAAATATAGTAAATAGAGGGAAAATAGGAATGAGTATGGATGCAAAGTTGGAAGGACTGTATCCAACCAACTTAGCTTTAGAGGTAGCTCAATTAGGTCTGAAATGCATCCAAACAGAAGTCAATGTGAGGCCATCAATGAAAGAAGTTGTTGAAAGATTGGAACAGATTGAAGCAGATAATCAGAATCCAGCTGGCAACAGTTATAAGAGAAGACGTGTTAACAACGCGATCAGCAAGATGGTGGTCAACTGA 1275 0.4329 MGNCCSHSSSSNGDDHPNAKNHLGRTEFSAGLSKIRLIQNDNSTSGGGCSSQFGGSSSLFGPSSGNNHTSGNNTSTTFWGSDNSHTSGVRDGEEFSQGEILNAPNSRVFTFAELRAATKNFRADSVIGEGGFGRVYKGFIRGEGLTIAIKKWNPGSLQGVAEWQSEVNFLGRLSHPNLVKLLGFGRENSELFLVYEFMHRGTLDNHLFGRGANVRPLSWDTRLKVMIDAARGLNFLHSMEMKIVHRDFKPSNILLDETFTAKLSDFGLAKCFSSLDQTHVTTRVVGTGGYAAPEYVATGRLKVKSDVYAFGIVVMEVLTGKRMQDIRRLLKQKSLSDWVKSNIVNRGKIGMSMDAKLEGLYPTNLALEVAQLGLKCIQTEVNVRPSMKEVVERLEQIEADNQNPAGNSYKRRRVNNAISKMVVN 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05321 424 ProSitePatterns Protein kinases ATP-binding region signature. 127 151 IPR017441 GO:0005524
Viun3g05321 424 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 198 407 - -
Viun3g05321 424 SUPERFAMILY Protein kinase-like (PK-like) 105 399 IPR011009 -
Viun3g05321 424 MobiDBLite consensus disorder prediction 60 86 - -
Viun3g05321 424 Pfam Protein kinase domain 123 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05321 424 MobiDBLite consensus disorder prediction 1 23 - -
Viun3g05321 424 CDD STKc_IRAK 127 397 - -
Viun3g05321 424 Gene3D Transferase(Phosphotransferase) domain 1 198 420 - -
Viun3g05321 424 MobiDBLite consensus disorder prediction 60 94 - -
Viun3g05321 424 Gene3D Phosphorylase Kinase; domain 1 106 197 - -
Viun3g05321 424 PANTHER OS01G0588500 PROTEIN-RELATED 70 398 - -
Viun3g05321 424 MobiDBLite consensus disorder prediction 1 17 - -
Viun3g05321 424 FunFam receptor-like protein kinase FERONIA 84 197 - -
Viun3g05321 424 ProSiteProfiles Protein kinase domain profile. 121 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05321 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05321 Viun-Chr3 59625495 59627755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05321 98 415 Receptor kinase-like Gene Family AT4G02010 41.796 4.53e-83 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun3g05321 Pkinase 7.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05321 - - gmx:100813304 546.199