Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05320 ATGGCAGTAGATCTGGCAGGTGTTGCCAAGATTAGGATGGAAGAACAGATAGCCATTGAAGAAGCAGCTTCCGCTGGATTGAAAAGTATGGAGCATCTCATTCGTGTTCTTTCCTCTCAAATCCCTTCCTCTTCTGCCTCTGCCTCCGCCTCCTCCTCTTCTTCAACACACCACCACCGTCTTAATCTCAACCACCTTGACTGCACGGAAATCACCGACTTCACCGTCTCCAAGTTCAAACAAGTCATCAACTTGTTGAATCGCACTGGTCACGCTCGCTTTCGCCGCGCGCCTTCTCATCCCTCTCCCTCTCTTCCTTCTCCACCGCACCCACAAGCTCAAAAACCCACTCTTCATTTTGCAAACCCCAAGCTCAAGTCAAATCCCAATCCCAACCCTTCTTCCACGGATTTGTCGGTTTCTCAGTATTCCAAGACCAAAGACACCACCTTTAGCATATCCCCTCCCATCTCCACCACCACCTCCTCCTTCATGTCCTCCGTCACGGCCGACGGCAGCGTCTCCGACGGCAAGATCGGCCCCGCCATCATCGCCTCCGGGAAGCCTCCTCTCTCCTCGTCCCACCGGAAAAGGTGTCACGACGCCACCCTCTCCGCCGGGAAAACCTCATCCTCCGCCCACTGTCATTGCTCCAAGAGAAGGAAATCTCGTATGAAACGAATGATTCGAGTGCCGGCCATAAGTTCGAAGATCGCCGATATCCCTGCGGACGAGTACTCGTGGAGAAAGTATGGTCAAAAACCCATCAAGGGGTCACCCTACCCACGAGGGTACTACAAGTGCAGTAGCGTGCGAGGGTGTCCGGCCAGAAAGCACGTGGAGCGAGCCCAGGATGACCCCAACATGCTCATCGTTACCTACGAGGGAGAGCACCGTCATCCGCAGCCGCGTCTGCCGGAAACCGCCGTCCCCGCCCCTGTGGGTTTCGGCGCTCAGGCTGTTTAA 966 0.5528 MAVDLAGVAKIRMEEQIAIEEAASAGLKSMEHLIRVLSSQIPSSSASASASSSSSTHHHRLNLNHLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSHPSPSLPSPPHPQAQKPTLHFANPKLKSNPNPNPSSTDLSVSQYSKTKDTTFSISPPISTTTSSFMSSVTADGSVSDGKIGPAIIASGKPPLSSSHRKRCHDATLSAGKTSSSAHCHCSKRRKSRMKRMIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAQDDPNMLIVTYEGEHRHPQPRLPETAVPAPVGFGAQAV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05320 321 MobiDBLite consensus disorder prediction 121 143 - -
Viun3g05320 321 Pfam WRKY DNA -binding domain 244 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05320 321 ProSiteProfiles WRKY domain profile. 237 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05320 321 Gene3D WRKY domain 228 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g05320 321 SMART WRKY_cls 242 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g05320 321 MobiDBLite consensus disorder prediction 94 143 - -
Viun3g05320 321 Pfam Plant zinc cluster domain 196 240 IPR018872 -
Viun3g05320 321 SUPERFAMILY WRKY DNA-binding domain 240 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g05320 321 FunFam WRKY transcription factor 65 226 303 - -
Viun3g05320 321 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 304 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05320 Viun-Chr3 59603032 59604578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05320 1 318 WRKY Transcription Factor Family AT2G24570 48.870 1.40e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun3g05320 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05320 - - var:108322692 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05320 3 59603032 59604578 Viun3g05320 3 59603032 59604578 ECH
Viun2g02140 2 29440163 29442329 Viun3g05320 3 59603032 59604578 PCT
Viun3g05320 3 59603032 59604578 Viun9g00386 9 2728870 2730392 PCT