Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05316 ATGGAAAAACATCTTGTTCCTGTAAGCATGGATAATCCTGATTTTGCTGTAGCCATGGATAGGTTAAAGCAGCCGCAGAAGAAGAAAAACACAGGGAGGAAGAAGACCGTGATAAAGAAGATTGAGAAATCCAGCAACAAGCAAGTGACATTCTCGAAAAGAAGAGCGGGGTTGTTCAAAAAAGCGAGTGAACTGTGCATTCTGTGCAATGTGAACATAGCCATAATTGTGTTTTCTCCGGCTGAAAAGTTGTTCTGCTTCGGTCACCCTGACGTGGAAGCCATTGTTGGAAGCTACCTGAAGGGAGCGAAAGTGTTGGTAGCATCAGAGTCAAGAGGGTCATATGAAGAAAGCAACATGCAATACGAGGAGGCAGTGAAGAATTTGGCGTTGGAGAAGAAGAATCTGACAGAAACTGAAAAAATGGTTAAGGGTTTGAGCAGAAGATGGTGGGAGGACCCCATTGATGAGATGAGTGAACGTGAGTTGGAACAGTTTATGATGGCGCTTTATGAGTTGAGGAAGAAATTAACAGAAAGGGCTGCTCAATTGTTCATGCTTTCAATTCAATGA 573 0.4311 MEKHLVPVSMDNPDFAVAMDRLKQPQKKKNTGRKKTVIKKIEKSSNKQVTFSKRRAGLFKKASELCILCNVNIAIIVFSPAEKLFCFGHPDVEAIVGSYLKGAKVLVASESRGSYEESNMQYEEAVKNLALEKKNLTETEKMVKGLSRRWWEDPIDEMSERELEQFMMALYELRKKLTERAAQLFMLSIQ 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05316 190 PANTHER MADS BOX PROTEIN 33 179 - -
Viun3g05316 190 CDD MADS_MEF2_like 32 102 IPR033896 GO:0000977|GO:0045944
Viun3g05316 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 87 IPR002100 GO:0003677|GO:0046983
Viun3g05316 190 SMART madsneu2 31 90 IPR002100 GO:0003677|GO:0046983
Viun3g05316 190 FunFam Agamous-like MADS-box protein AGL62 43 108 - -
Viun3g05316 190 ProSiteProfiles MADS-box domain profile. 31 91 IPR002100 GO:0003677|GO:0046983
Viun3g05316 190 SUPERFAMILY SRF-like 32 101 IPR036879 GO:0003677|GO:0046983
Viun3g05316 190 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677|GO:0046983
Viun3g05316 190 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677|GO:0046983
Viun3g05316 190 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677|GO:0046983
Viun3g05316 190 Gene3D - 43 112 IPR036879 GO:0003677|GO:0046983
Viun3g05316 190 Coils Coil 115 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05316 Viun-Chr3 59561771 59562456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05316 32 184 Type I MADS-box Gene Family AT2G24840 45.062 4.85e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun3g05316 SRF-TF 6.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05316 - - vra:106766532 251.521