Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05311 ATGAGCTTCTCCAAGGGTTCTCCTGGCAGCCAGACGCCGGGTGATGTAGAGGCCGGGCCTCCCACTGATGATTTTGATGATGGAGACTTTTCTGCTGATCCATTTGATGTTACCAGAACAAAGAATGCTCCGGTTCAACGCCTCAGGCGGTGGAGGCAAGCAGCACTAGTACTCAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTAAAGAAAGAAGAAGAAAAGAAGAGAGTATTAAGAATTGTTATAGTGCATACACGCGCCATTCAAGCTGCATATCGATTCAAAGAAGCTGGGCAATTGAATGGACTTGGAACTATAAAACCTCATTTAAGCGAAACTGGAGAATTTTCAATTGGACAAGAACAACTTTCTTCAATTTCAAGGGACAGAGACACTACTACTCTGCGGGAATGTGAAGGGGTTGTAGGGTTATCAAATTTATTGAAAACCAATTTAGAGAAGGGGATTCGAGGTGATGATGCTGACTTGGTAATACGGAGGAACGCCTTTGGTTCCAACAACTACCCTCGAAAGTCTGGAAGAAGTTTTTTGACGTTTATGTGGGATGCTTGCAAGGATTTGACATTGATTATTCTAATGGTAGCTGCAATGGCTTCATTAGCACTGGGGATAAAATCTGAGGGCATCCAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTGTTCTTGTTATTCTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCAAGATCTAAATGAGCACAAGAGAAACATTCATTTGGAGGTCATTCGAGATGGTAGAAGAGTTGAGATCTCCATTTACGATGTTGTTGTTGGTGATATTATACCCCTTAACATTGGTGACCAGGTCCCCGCTGATGGAGTTTTGATCTCTGGTTACTCTCTTGCAATTGATGAATCAAGTATGACCGGGGAGAGCAAAATTGTCCAAAAAAATTCTAATGATCCTTTTCTGATCTCTGGATGTAAAGTTGCAGATGGCAATGGAACTATGCTGGTAACGGCTGTTGGTATTAATACTGAATGGGGGCTTCTGATGGCTAGCATTTCAGAAGACAATGGTGAAGAAACTCCTTTGCAGGTACGCTTAAATGGTCTCGCTACCTTAATTGGTATTGTTGGACTCTCTGTGGCTGTTATTGTTCTGATAGTGCTACTGGCCAGGTATTTCTCTGGGCATACTAGAAACCCAGATGGAAGTGTTCAATTTATAGCGGGCAAAACCAAAGTAGGTGGTGCTATTGATGGAGTAATCAAGATATTCACTATTGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGTTGCCTTTAGCAGTTACGTTAACACTTGCCTACTCGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTCTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATCTGCAGTGATAAGACTGGAACATTGACTATGAATAAGATGACTGTGGTTGAGGCTTGCATTGGTGGGGGGAAGATCACTCCTCATGATAAATTAGACCAGTTGTCTCCTATGCTACGCACTTTGCTGTTTGAAGGTGTTGTGCTGAACACTAATGGAAGTGTTTATGTCCCCCAGGGTGGTAATGATGTTGAAATTTCTGGATCACCAACGGAAAGGGCAATTTTAGAGTGGGGAATAAAGCTTGGGATGCCTTTTGATTCTGTCAGATCATCAATTATCCATGTCTTCCCATTTAATTCAGACAGAAAGCGAGGAGGAGTTGCAATACAGAGGCCCAACTCTGAAATCCATATACATTGGAAAGGTGCCGCTGAGATAGTCCTTGCATGCTGTACAGGATATATTGATGTTAATGATCAGTTGATGGAGATGGATGAAGAGAAGATGTCATATTTTAAAAAGGCTATTGAAGATATGGCTGCTGATAGTCTACGCTGTATTGCCATTGCATTTAGATCATTTGAAATGGAGAATGTTCCAACTGGTGAAGAACTTGCTCACTGGTCATTACCAGAGGATGATCTTTCTTTATTGGCTATTATTGGCCTGAAGGATCCTTGTCGACCTGGGGTCAGAGATGCAGTGCAGCTTTGCCAAAAGGCCGGGGTTAAGGTAAAAATGGTCACTGGTGACAACGTTAAAACTGCAAAAGCAATAGCTGTGGAATGTGGAATTCTTGGTTCAATATCTGAAGCAACAGAACCAATCATCATTGAAGGAAAAACTTTTCGTGCATTGACAGATCAAGGGAGAGAACAAATTGTTGACAGCATATTGGTTATGGGACGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGAGATGGAACAAACGATGCTCCCGCACTACATGAGGCCGATATTGGTCTTTCAATGGGTATTCAAGGAACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTAGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCACTTGCTATAAATGTTGTTGCTGCATTTTCCACAGGCGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCATTGGCCTTGGCCACTGAACCACCAACTGATTCTTTAATGGATCAGCGTCCAATGGGCCGAAGAGAACCGCTTGTATCAAATATTATGTGGAGGAATCTGCTGATACAGGCAATTTATCAAGTTTCTGTGTTGCTTATACTTAATTTCCAAGGTGTGAAATTACTGGGTTTGAGGAATGAACCCAACCGCCCTGCAATCAAAGCGAAGAACTCTCTGATATTCAATGCTTTTGTTTTTTGTCAAGTCTTTAATGAATTTAATGCCCGAAAGCCAGATAGCTTCAACATTTTCAAGGGAGTCACAAGAAACTACCTCTTTATGGGGATAGTGGCAACAACTGTTGTGCTCCAGATTGTCATCATTGAATTTCTTGGAAAGTTCACTAAAACAGTCAAGCTTGATTGGAAGCTGTGGCTCATTTCTGTTATTATAGCATTTATCAGCTGGCCTCTTGCTGTGGTTGGAAAGCTGATACCAGTACCTGAAGCTCAATTCAGTAACGCTGTTCGAACATGCTTTGAAAAATTTAAGAAGACGGAATCTGAGGCGTCTCAACGGAGATAA 3237 0.4211 MSFSKGSPGSQTPGDVEAGPPTDDFDDGDFSADPFDVTRTKNAPVQRLRRWRQAALVLNASRRFRYTLDLKKEEEKKRVLRIVIVHTRAIQAAYRFKEAGQLNGLGTIKPHLSETGEFSIGQEQLSSISRDRDTTTLRECEGVVGLSNLLKTNLEKGIRGDDADLVIRRNAFGSNNYPRKSGRSFLTFMWDACKDLTLIILMVAAMASLALGIKSEGIQEGWYDGGSIAFAVVLVILVTAISDYKQSLQFQDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDIIPLNIGDQVPADGVLISGYSLAIDESSMTGESKIVQKNSNDPFLISGCKVADGNGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGLATLIGIVGLSVAVIVLIVLLARYFSGHTRNPDGSVQFIAGKTKVGGAIDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMXKMMADKALVRRLSACETMGSATTICSDKTGTLTMNKMTVVEACIGGGKITPHDKLDQLSPMLRTLLFEGVVLNTNGSVYVPQGGNDVEISGSPTERAILEWGIKLGMPFDSVRSSIIHVFPFNSDRKRGGVAIQRPNSEIHIHWKGAAEIVLACCTGYIDVNDQLMEMDEEKMSYFKKAIEDMAADSLRCIAIAFRSFEMENVPTGEELAHWSLPEDDLSLLAIIGLKDPCRPGVRDAVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSISEATEPIIIEGKTFRALTDQGREQIVDSILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALAINVVAAFSTGDIPLNTVQLLWVNLIMDTLGALALATEPPTDSLMDQRPMGRREPLVSNIMWRNLLIQAIYQVSVLLILNFQGVKLLGLRNEPNRPAIKAKNSLIFNAFVFCQVFNEFNARKPDSFNIFKGVTRNYLFMGIVATTVVLQIVIIEFLGKFTKTVKLDWKLWLISVIIAFISWPLAVVGKLIPVPEAQFSNAVRTCFEKFKKTESEASQRR 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05311 1079 FunFam Calcium-transporting ATPase 43 99 - -
Viun3g05311 1079 SUPERFAMILY Calcium ATPase, transmembrane domain M 145 1051 IPR023298 -
Viun3g05311 1079 Gene3D - 44 99 - -
Viun3g05311 1079 ProSitePatterns E1-E2 ATPases phosphorylation site. 485 491 IPR018303 -
Viun3g05311 1079 Pfam E1-E2 ATPase 261 461 - -
Viun3g05311 1079 Gene3D - 480 833 IPR023214 -
Viun3g05311 1079 SMART Cation_ATPase_N_a_2 142 213 IPR004014 -
Viun3g05311 1079 SUPERFAMILY HAD-like 481 893 IPR036412 -
Viun3g05311 1079 PRINTS P-type cation-transporting ATPase superfamily signature 307 321 - -
Viun3g05311 1079 PRINTS P-type cation-transporting ATPase superfamily signature 483 497 - -
Viun3g05311 1079 PRINTS P-type cation-transporting ATPase superfamily signature 681 692 - -
Viun3g05311 1079 PRINTS P-type cation-transporting ATPase superfamily signature 812 824 - -
Viun3g05311 1079 PRINTS P-type cation-transporting ATPase superfamily signature 703 713 - -
Viun3g05311 1079 PRINTS P-type cation-transporting ATPase superfamily signature 788 807 - -
Viun3g05311 1079 MobiDBLite consensus disorder prediction 1 38 - -
Viun3g05311 1079 FunFam Calcium-transporting ATPase 9 plasma membrane-type 337 507 - -
Viun3g05311 1079 Pfam Cation transporting ATPase, C-terminus 873 1050 IPR006068 -
Viun3g05311 1079 FunFam Calcium-transporting ATPase 682 833 - -
Viun3g05311 1079 Pfam Cation transporter/ATPase, N-terminus 144 207 IPR004014 -
Viun3g05311 1079 NCBIfam calcium-translocating P-type ATPase, PMCA-type 134 1052 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Viun3g05311 1079 SFLD Haloacid Dehalogenase 465 840 - -
Viun3g05311 1079 FunFam Calcium-transporting ATPase 805 1054 - -
Viun3g05311 1079 Pfam Ca2+-ATPase N terminal autoinhibitory domain 32 75 IPR024750 GO:0005516
Viun3g05311 1079 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 489 693 IPR023299 GO:0000166
Viun3g05311 1079 PRINTS H+-transporting ATPase (proton pump) signature 820 845 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g05311 1079 PRINTS H+-transporting ATPase (proton pump) signature 788 804 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g05311 1079 PRINTS H+-transporting ATPase (proton pump) signature 634 652 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g05311 1079 CDD P-type_ATPase_Ca_PMCA-like 168 921 - -
Viun3g05311 1079 FunFam Calcium-transporting ATPase 493 688 - -
Viun3g05311 1079 PANTHER CATION TRANSPORTING ATPASE 104 1053 - -
Viun3g05311 1079 Gene3D - 493 688 IPR023299 GO:0000166
Viun3g05311 1079 SUPERFAMILY Calcium ATPase, transduction domain A 261 356 IPR008250 -
Viun3g05311 1079 Gene3D - 167 359 - -
Viun3g05311 1079 SFLD p-type atpase 465 840 IPR044492 -
Viun3g05311 1079 FunFam Calcium-transporting ATPase 238 359 - -
Viun3g05311 1079 FunFam Calcium-transporting ATPase 191 248 - -
Viun3g05311 1079 Gene3D - 191 1042 - -
Viun3g05311 1079 Pfam haloacid dehalogenase-like hydrolase 480 802 - -
Viun3g05311 1079 NCBIfam HAD-IC family P-type ATPase 228 399 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g05311 1079 NCBIfam HAD-IC family P-type ATPase 755 868 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g05311 1079 NCBIfam HAD-IC family P-type ATPase 424 508 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05311 Viun-Chr3 59524859 59553438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05311 2 1076 Primary Pumps ATPases AT5G57110 68.148 0.0 1496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05311 K01537 - gmx:100790157 1779.61