Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05301 ATGGACAATATGGGTGGGGATTACAACCATTTCTGGGACACCTTCTTCCAAAACCAAGACCTCGATAGCTGGGCGATGGATGAGGCGGCGATGTCCGGGTACTATGATTCGAGCTCTCCGGACGGTGGTGCTTCATCGGTGGCATCAAAGAACATTGTTTCGGAGAGGAATAGGAGGAAGAAGCTGAACGAAAGGCTCTTTGCGCTCAGAGCAGTGGTCCCCAACATCAGTAAGATGGACAAGGCTTCTATCATTAAGGATGCTATTGAATACATCCAGCACTTGCATGAGCAAGAGAAGAGAATCGAAGCAGAGATTTTGGATCTGGAATCTGGGAAGCTCAAGAACCCAACCTATGAATTTGAGCACGACTTGCCTATTCTCCTCAGGTCTAAGAAGAAGAGAACGGAACAGCTATTTGATTCTGCCACTTCAAGAAATTCCCCAATTCAACTAATTGAGCTGAGGGTTGCATACATGGGAGATAAGACGTTTGTGGTGAGCTTGACATGCAGTAAAAGGATAGACACAATGGTAAAACTGTGTGAGGTCTTCGAATCTTTAAATCTCAAGGTGATTACAGCCAATATCACTTCTTTTTCAGGAACACTTTTGAAGACTGTCTTCATTGAGGCTGATGAAGAAGAGAAAGATGTTTTGCAGATAAAAATTGAGACAGCAATTTCAGCTCTGAATGGTCCTCAAAGCCCAATGAGTATCTGA 723 0.4412 MDNMGGDYNHFWDTFFQNQDLDSWAMDEAAMSGYYDSSSPDGGASSVASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKRIEAEILDLESGKLKNPTYEFEHDLPILLRSKKKRTEQLFDSATSRNSPIQLIELRVAYMGDKTFVVSLTCSKRIDTMVKLCEVFESLNLKVITANITSFSGTLLKTVFIEADEEEKDVLQIKIETAISALNGPQSPMSI 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05301 240 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 113 - -
Viun3g05301 240 Gene3D - 45 112 IPR036638 GO:0046983
Viun3g05301 240 SMART finulus 52 101 IPR011598 GO:0046983
Viun3g05301 240 Pfam Helix-loop-helix DNA-binding domain 53 96 IPR011598 GO:0046983
Viun3g05301 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Viun3g05301 240 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 39 225 - -
Viun3g05301 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 109 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05301 Viun-Chr3 59409265 59415437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05301 2 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 58.411 4.67e-81 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g05301 HLH 4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05301 - - gmx:100803916 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05301 3 59409265 59415437 Viun3g05301 3 59409265 59415437 ECH
Viun3g05301 3 59409265 59415437 Viun9g00363 9 2503059 2509497 PCT