Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05297 ATGTCTTCGTGTTTGACCGGAGCTGGGGGGAGAACCTACGGATTCGATTTCGAATTTGTTAAATCCCCGTCTTCCTCCACCAGGACCTCACACACCTCTTCTTCGCCTTCTTCAACAATCTCCGAATCGAGCAATTCTGCTGCGCTCGCAATCTCCACCAAGAAACCCAGAACGCCGAGAAAGCGACCGAACCAAACCTACAATGAAGCAGCGGCACTTCTATCCACGGCCTACCCGAACCTCTTCTCGACGAAGAACCTCAAAACGCAGGGGAAATTCGCAAAGCCCGCATCGGAGAATTTCGATTATGACTCTTCGGAGCTGTTTTTGCCGTTCAGGGTTTTGGACGGATCGTCTTCGTGTTTCCTTCTGGACCAACCGGGCCCCAAGCCCGTGGAGAGGCCCAAAGTGGTGAGCGTGCAGGAGAAGGCGTGTGGGAGCCCCGGGGAGATAAGCTCCGTAGTGAATTTCAATTCTCTCGAATTGAACGACGACTGCGAAGAGAGCCTCGACGCGGAATCGATTCTCGACGAGGAAATTGAAGAAGGGATCGATAGCATCATGGGGAGCAGGGTCCAAGAAATCTCAAACGACGCCGTCAATAACTTTCCCTGGATAATGCCTTTTGGCGGGAAATCGGACTTCCCCAGACCCCGTGTCAGCGCTCTCCGACACGTCGACGACGGAAACTGGTGGAATTTTCCGGCCGTCGATATTCATCAGATATCTCCCAAAATTAACACCAAGCCCCCTCCGGTGACCGCCGAGAAGAAGATGAAGAAGAAGAAGGTGACAGCGATTGCGGCGACGGAGAAACCGGCCGTGGTGGAGTTGAAGAACGCGGAATTGCCCAAACCGAAACAAGGTTTGATGTTGAAATTGAATTACGACGACATTCGGAGCGCTTGGTCCGACCGTGGGACACCGTTCGCCGACGATAGCCCACTGGCCGACTTGCCGGAAACTGACGTCACTGCGCGGCTGTCGCAAATTGATTTGTGGTGGGACAATGGCGGAGTGAGAGAAGCTAGCGTGCAGCGCTACAAAGAGAAACGGCGAACGCGGCTGTTCTCGAAGAAGATCAGATACCAGGTGAGGAAGGTCAACGCAGATCGACGGCCCAGAATGAAGGGGCGATTTGTTAGGAGGCTCAATTCTAGCTCAAATGCACACAGATGA 1179 0.5352 MSSCLTGAGGRTYGFDFEFVKSPSSSTRTSHTSSSPSSTISESSNSAALAISTKKPRTPRKRPNQTYNEAAALLSTAYPNLFSTKNLKTQGKFAKPASENFDYDSSELFLPFRVLDGSSSCFLLDQPGPKPVERPKVVSVQEKACGSPGEISSVVNFNSLELNDDCEESLDAESILDEEIEEGIDSIMGSRVQEISNDAVNNFPWIMPFGGKSDFPRPRVSALRHVDDGNWWNFPAVDIHQISPKINTKPPPVTAEKKMKKKKVTAIAATEKPAVVELKNAELPKPKQGLMLKLNYDDIRSAWSDRGTPFADDSPLADLPETDVTARLSQIDLWWDNGGVREASVQRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRLNSSSNAHR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05297 392 MobiDBLite consensus disorder prediction 22 64 - -
Viun3g05297 392 Pfam CCT motif 341 382 IPR010402 GO:0005515
Viun3g05297 392 ProSiteProfiles CCT domain profile. 341 383 IPR010402 GO:0005515
Viun3g05297 392 MobiDBLite consensus disorder prediction 22 52 - -
Viun3g05297 392 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05297 Viun-Chr3 59375588 59378827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05297 258 383 C2C2-CO-like Transcription Factor Family AT1G25440 40.789 3.42e-22 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun3g05297 CCT 5.2e-17 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05297 3 59375588 59378827 Viun3g05297 3 59375588 59378827 ECH