Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05292 ATGCGGGATGGTGTGAAGAAGTCAAACGACAAAGGATCTAAAAAATCTGGTCATTTGAAGGCACGTACGAAAGGGAAGAAGGATAAGGTGAAAGTGGAACCGAAATCTCACACAAAAAATGTTGGCACTGACTTATCAAAGAAGAGAGTTATCTCTTCCCTCAAGATCAAAGGACCTCGTAAGGATTCTTCAGAGAAGAAATTGACTACTGGACAAAAATTGCCTTCGAAGAACAGAAAATCTTCACAGAAGCCATTCTCAAAGATACAAGACAAAAGAGCTTCTCTTAACTCTAGAAAAGAGGGGAAAAATGCTGATGGGGAGGTAAAGCTTCAAAAAATGAAGAGAAAGAGAACAAAGAAAAGACAAAGGAACAACTTGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAGCACGGTATCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAACGAGCAAGGAAACAAATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAATTGGATTCCCTTGGTTCATTGAGTAGCATTGAAGATTCTGCAATCGCTCCAGGTGGATCTGGTTGTCATGAACATATCATCTGTGCTAAGTGCAAGCGTAAAGAACCTTCAGATAATGATGTTATACGATGCTATGGTACATGCAAGCGTGCTTTTCACCAAAAATGTGTGGACCCTTCTTTAGACACTGAAAATGTTCCTCCTGGAGGGCAGGACTGGTTTTGTAATTTCTGTGAATGTAAGATGGAAATACTGGAAGCTATGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTGCTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATACCTGATGGTGAGACTACATTACGGAATCCTGAAGAAGAATGGCCGTCAGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCACAATATCAACATGGAAGGAAGTAATGATAGTGCATCTGATGATTTAAGCAGTTCTACCAGTCTGTGTTATTCCGAAGATGAACATTTTCCAGTACATGGTGTCAGTCATGAATATCTTTTTGTCAATACCAGCATAGATTCTGATGAGTCTGAGGGCAAAGCCTGTGGGCGTAGGCAGCGAAAAGCTGTTGATTACAAGCAGCTTTATGATGAAATGTTTGGGAAGGAAGCTCCTGCATATGAACAATTGAGTGAAGACGAAGACTGGGGTCCTGGCAAAAGAAAGCGGAGAGAAAAGGAGTGTGATGCTGTTGATTCTCTTATGACGTTGCATGAAAGTGAGAACATTCACCCCAATAATGAGCACAACAACAACATACCAAGAAAAAATTCTTCAGGCACAAATATCAAAAGACATTGTTTTAGGATTCCACGTGATTCAGTTGAGAAGCTTCGCCAAGTTTTTGCTGTGAATGAACTTCCTCCAAGATCTATTAGAGAGAATCTTTCAAAAGAGCTAGGACTTGACACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTGGCACTTAAAAGCAGAAAGCATCAAGCAGGAGAAGCAAATCAACTTAAGGGAATCACTTCCACAAAGAACTCCACATTACAAAATCAGGAGAAAACTGATATTTTGAAATCAAAGACCTTGAAATTTACTACAAGTCATTCTCAGAAGGATGTTAAAAATGTCAGTGGAAGAAAGAAAATTAAGTTTTCTAGCAAGAAAATACCTCCTGAAGAAAATGGCAACAAGGAGTCTATGGAGATCAGTGATGATGTGAGCTTGAAGATACTATTGAAGAAGAAAAAGAAGAGGTTGGTAAGTTTTAAATTTGTAGGAGATTCCCAGACGGCAGAGTTGGAATTTGAAAGACTATGCAAATTGAAGCAAAAACTAGTTAGTATGAAACAAAAATTATCAACAATTCAAAGTTTCAGTGTAAAGGGTTCAGATGAACCCCATTCTAATGAACCATCCATTGTATATGTACCCACAGCTGTGTTAAGGGAAAAAACTGAATGA 2085 0.3942 MRDGVKKSNDKGSKKSGHLKARTKGKKDKVKVEPKSHTKNVGTDLSKKRVISSLKIKGPRKDSSEKKLTTGQKLPSKNRKSSQKPFSKIQDKRASLNSRKEGKNADGEVKLQKMKRKRTKKRQRNNLDLDDPSRLQRRARYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSLSSIEDSAIAPGGSGCHEHIICAKCKRKEPSDNDVIRCYGTCKRAFHQKCVDPSLDTENVPPGGQDWFCNFCECKMEILEAMNAHLGTHFSLHSAWQDVFKEEAAIPDGETTLRNPEEEWPSDDSEDDDYDPERKEDSHNINMEGSNDSASDDLSSSTSLCYSEDEHFPVHGVSHEYLFVNTSIDSDESEGKACGRRQRKAVDYKQLYDEMFGKEAPAYEQLSEDEDWGPGKRKRREKECDAVDSLMTLHESENIHPNNEHNNNIPRKNSSGTNIKRHCFRIPRDSVEKLRQVFAVNELPPRSIRENLSKELGLDTEKVSKWFKNARYLALKSRKHQAGEANQLKGITSTKNSTLQNQEKTDILKSKTLKFTTSHSQKDVKNVSGRKKIKFSSKKIPPEENGNKESMEISDDVSLKILLKKKKKRLVSFKFVGDSQTAELEFERLCKLKQKLVSMKQKLSTIQSFSVKGSDEPHSNEPSIVYVPTAVLREKTE 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05292 694 MobiDBLite consensus disorder prediction 459 475 - -
Viun3g05292 694 SUPERFAMILY FYVE/PHD zinc finger 215 279 IPR011011 -
Viun3g05292 694 Pfam PHD-finger 222 276 IPR019787 -
Viun3g05292 694 Pfam Homeodomain 485 529 IPR001356 GO:0003677
Viun3g05292 694 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 7 692 - -
Viun3g05292 694 MobiDBLite consensus disorder prediction 308 359 - -
Viun3g05292 694 SUPERFAMILY Homeodomain-like 470 531 IPR009057 -
Viun3g05292 694 CDD PHD_PRHA_like 223 273 IPR045876 -
Viun3g05292 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 285 IPR013083 -
Viun3g05292 694 MobiDBLite consensus disorder prediction 69 92 - -
Viun3g05292 694 SMART HOX_1 476 538 IPR001356 GO:0003677
Viun3g05292 694 MobiDBLite consensus disorder prediction 26 44 - -
Viun3g05292 694 CDD homeodomain 477 538 IPR001356 GO:0003677
Viun3g05292 694 SMART PHD_3 222 274 IPR001965 -
Viun3g05292 694 MobiDBLite consensus disorder prediction 1 132 - -
Viun3g05292 694 FunFam pathogenesis-related homeodomain protein 476 540 - -
Viun3g05292 694 MobiDBLite consensus disorder prediction 93 113 - -
Viun3g05292 694 ProSiteProfiles 'Homeobox' domain profile. 474 534 IPR001356 GO:0003677
Viun3g05292 694 MobiDBLite consensus disorder prediction 455 475 - -
Viun3g05292 694 MobiDBLite consensus disorder prediction 1 16 - -
Viun3g05292 694 ProSitePatterns Zinc finger PHD-type signature. 223 273 IPR019786 -
Viun3g05292 694 Gene3D - 476 544 - -
Viun3g05292 694 ProSiteProfiles Zinc finger PHD-type profile. 220 276 IPR019787 -
Viun3g05292 694 MobiDBLite consensus disorder prediction 344 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05292 Viun-Chr3 59354154 59359062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05292 125 563 Homeobox Transcription Factor Family AT4G29940 50.439 3.28e-138 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Viun3g05292 Homeodomain 1.3e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05292 3 59354154 59359062 Viun3g05292 3 59354154 59359062 ECH