Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05273 ATGGAGAAGAGTAAAAAATTGCAGAAGAGCTACTTTGATGTGTTGGGACTGTGCTGTTCCTCCGAAGTACCACTCATTGAAAACATCTTAAAACCTCTCGAAGGAATCAAAGAGGTTTCTGTCATAGTTCCTTCACGGACTGTCATTGTTCTCCATGACACCCTTGTCATTTCGCAACTTCAAATCGTTAAGGCATTGAATCAAGCGAGATTAGAAGCTAATGTGAGAGTACATGGAGATGAAAATCATGGAAAGAGATGGCCAAGCCCTTACTCGATTGCTTCGGGTTTTCTACTTTTGGTTTCTTTGCTGAAATTTGTGTACCCTCCTTTGAAGTATGTAGCAGTTGGTGCAGCTGCTGCGGGTATTTACCCTATCGTTCGAAAGGCCTTTGCCTCCATTCGTAATCTTAGGATTGACATTAGCATTCTCATGATCATAGCAGTTGTTGGGACAATCGCTATGCATGATTATTTGGAAGCCGGCACCATTGTTTTCCTCTTCTCAATTGCAGAATGGCTAGAATCAAGGGCAAGCTACAAGGCAACTGCAGCAATGTCGTCTTTGATGAACATAGTCCCTCAAAAAGCAGTGATAGCTGAAACAGGAGAGGTTGTGGATGCTGATGAGGTGAAAGTAAATACCGTTTTAGCTGTTAAAGCAGGTGAGGTGATACCCATAGATGGAGTTGTTGTGGATGGAACCTGTGAAGTTGACGAGAAAACTTTGACTGGGGAATCATTCCCTGTGGCAAAACTAAAGGATTCTACTGTATGGGCTGGCACCATCAATATGAATGGTTATATCAGTGTGAAAACTACTGCACTGGCTGAAGACTGTGTGGTGGCTAAAATGACAAAACTTGTGGAAGAAGCTCAAAACAGCAAAACCGACGTTCAGACATTGATTGAGAAGTTTGTCAAGTTTTATACCCCTGCCGTTGTAATCATATCAATCCTTGTAGCAGTGATTCCACTTGCGTTAAAGTTAAAATTACGTACAGAGAAATACTGGATTCACATAGCATTGGTTGTTTTAGTGAGTGCATGCCCATGTGCACTCATCCTTTCAACTCCAGTTGCAACCTTTTGTGCTTACACCAGAGCAGCCACATCAGGTCTTCTCATCAAAGGGGGTCATCATCTTGAAACACTTGCAAAAATCAAGGTCATGGCCTTTGACAAAACGGGTACCATAACTAAGGGTGATTTTGTGGTCACAGAGTTTCAATCTCTTTCAGATGACATAGATTTGAACACATTGATTTACTGGGTGTCAAGTGTAGAGAGCAAGTCAAGCCATCCACTGGCATCTGCGATTGTTGATTATGGAAGGTCTCTCTCCGTGGAACCAGAGCCAGAAAAGGTGACAGAATTTGAAAACTTTCCTGGGGAAGGAATCGGTGGAAAAATGGAAGACAGAGTTATTTACATAGGAAATAAAAAAATAGCCGCAAGAGCCGGGTCTGAATCAGTTCCAATATTACAAGGAGAAAATGCAAGAGGAAAGACCACTGGATACATATACATAGGAGCAACCCCAGTTGGATTTTTCTCTCTTTCAGATGTTTGCAGGTTAGGTGTTGAGGAAGCAATCGGGCGGTTGAAGTTAATGGGAATAAAAACAGCCATGCTCACTGGAGACAGTGAATCTGCTGCAATGCAAGCACAGGAGCAGCTGGGGCATTCTCTGGAGTTAGTCCATGCAGAACTGTTGCCGGAGGACAAGGTGACAATCATCTCAGAGTTTAAGAGGGAAGGTCCAACAGCCATGATCGGAGATGGTATAAACGACGCGCCGGCATTAGCTTCAGCTGATATCGGAATCTCAATGGGCATTTCAGGTTCTGCACTCGCAAGTGAGACAGGCAACATAATTCTTATGTCAAATGACATTAGGAAGATACCTGAAGCCATTAAGCTAGCAAGAAGAACACGTCGGAAAGTGCTGCAAAACATCATTCTGTCGATCACTACTAAGGCTGCGATTATTGGTTTGGCCATTGGTGGTCATCCATATGTTTGGGCAGCAGTGGTTGCTGATGTTGGAACGTGTCTGGTGGTCATCTTCAACAGCATGCTACTCCTTCCAAGAGCACACAAGCATGGAGGAAAATCTTGTAGATCGTCCACTAAATCTCATAACCACAATAGTGGATGCGGTGGCACTCATGGCCATGATCATGCTCACCACCAACATCAACATTGTCATGATCAACACGATCACCATCACCATCAACACAAGCATGAACATGATCACCACAAACATCAACATTGTCATGATCAACACGATCATAAACATGATCACCACCATCAGCACGATCATGATCACGATTCCCACCATCAGAAAAAGCACGAGCACGATCACCACCATGAGCATCAACACGAGCATGATCACCACCGCCACACCAATGACCACTGCCACCCTATCCCTGGTTGTGAAAACCTGAAAGACCATAAATGCAGAAGTGTTTCACATTGCAACGAAGACACGCATCATAAAAAGTCAGGTTGTCATCCAGAAAGTGAGAAGCATGGGACAGGTGAAATATCCGTTGACATCATCGTTGAACATGTTGAATCAAGCCCAATGCAGGGTTGCTCAAGTTTGGCAGAGAAAGAGAAAGGTTCCTGCTGTGAAGGCTGCTCAGACACGTGCGAGAATATGGGTGTGGTGTGTGGTTGTGAGAGTTCAAAAGAGGGAGAAGATAGTGCGTGTTGCAGAAACGAATGGTCTTCAAAAGAATGCAATGAATCTGGGATTATTCATGGTTTGAATAAGAGAGAATATGGTGGATGTTGCAAGAGCTACATGAAGGAATGCTGTGGGAAAGTTGGACACTCAAGAGGTGGTTTTGTTGGTTTGTCAGAAATTATGACAGAATAG 2886 0.4369 MEKSKKLQKSYFDVLGLCCSSEVPLIENILKPLEGIKEVSVIVPSRTVIVLHDTLVISQLQIVKALNQARLEANVRVHGDENHGKRWPSPYSIASGFLLLVSLLKFVYPPLKYVAVGAAAAGIYPIVRKAFASIRNLRIDISILMIIAVVGTIAMHDYLEAGTIVFLFSIAEWLESRASYKATAAMSSLMNIVPQKAVIAETGEVVDADEVKVNTVLAVKAGEVIPIDGVVVDGTCEVDEKTLTGESFPVAKLKDSTVWAGTINMNGYISVKTTALAEDCVVAKMTKLVEEAQNSKTDVQTLIEKFVKFYTPAVVIISILVAVIPLALKLKLRTEKYWIHIALVVLVSACPCALILSTPVATFCAYTRAATSGLLIKGGHHLETLAKIKVMAFDKTGTITKGDFVVTEFQSLSDDIDLNTLIYWVSSVESKSSHPLASAIVDYGRSLSVEPEPEKVTEFENFPGEGIGGKMEDRVIYIGNKKIAARAGSESVPILQGENARGKTTGYIYIGATPVGFFSLSDVCRLGVEEAIGRLKLMGIKTAMLTGDSESAAMQAQEQLGHSLELVHAELLPEDKVTIISEFKREGPTAMIGDGINDAPALASADIGISMGISGSALASETGNIILMSNDIRKIPEAIKLARRTRRKVLQNIILSITTKAAIIGLAIGGHPYVWAAVVADVGTCLVVIFNSMLLLPRAHKHGGKSCRSSTKSHNHNSGCGGTHGHDHAHHQHQHCHDQHDHHHHQHKHEHDHHKHQHCHDQHDHKHDHHHQHDHDHDSHHQKKHEHDHHHEHQHEHDHHRHTNDHCHPIPGCENLKDHKCRSVSHCNEDTHHKKSGCHPESEKHGTGEISVDIIVEHVESSPMQGCSSLAEKEKGSCCEGCSDTCENMGVVCGCESSKEGEDSACCRNEWSSKECNESGIIHGLNKREYGGCCKSYMKECCGKVGHSRGGFVGLSEIMTE 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05273 961 Gene3D - 403 524 IPR023299 GO:0000166
Viun3g05273 961 SUPERFAMILY Calcium ATPase, transmembrane domain M 142 659 IPR023298 -
Viun3g05273 961 PRINTS P-type cation-transporting ATPase superfamily signature 239 253 - -
Viun3g05273 961 PRINTS P-type cation-transporting ATPase superfamily signature 538 548 - -
Viun3g05273 961 PRINTS P-type cation-transporting ATPase superfamily signature 392 406 - -
Viun3g05273 961 PRINTS P-type cation-transporting ATPase superfamily signature 592 611 - -
Viun3g05273 961 PRINTS P-type cation-transporting ATPase superfamily signature 616 628 - -
Viun3g05273 961 Pfam haloacid dehalogenase-like hydrolase 388 606 - -
Viun3g05273 961 MobiDBLite consensus disorder prediction 728 766 - -
Viun3g05273 961 Gene3D - 3 77 - -
Viun3g05273 961 FunFam Copper-transporting ATPase 1, putative 179 293 - -
Viun3g05273 961 MobiDBLite consensus disorder prediction 700 804 - -
Viun3g05273 961 ProSitePatterns Hypothetical cof family signature 2. 592 614 - -
Viun3g05273 961 ProSiteProfiles Heavy-metal-associated domain profile. 8 74 IPR006121 GO:0046872
Viun3g05273 961 Gene3D - 383 643 IPR023214 -
Viun3g05273 961 PRINTS Copper-transporting ATPase signature 570 587 - -
Viun3g05273 961 PRINTS Copper-transporting ATPase signature 312 326 - -
Viun3g05273 961 PRINTS Copper-transporting ATPase signature 181 199 - -
Viun3g05273 961 PRINTS Copper-transporting ATPase signature 627 641 - -
Viun3g05273 961 FunFam Putative cadmium/zinc-transporting ATPase 3 4 77 - -
Viun3g05273 961 ProSitePatterns E1-E2 ATPases phosphorylation site. 394 400 IPR018303 -
Viun3g05273 961 NCBIfam heavy metal translocating P-type ATPase 142 695 IPR027256 GO:0006812|GO:0016020|GO:0019829
Viun3g05273 961 Gene3D - 178 293 - -
Viun3g05273 961 CDD P-type_ATPase_HM 93 694 - -
Viun3g05273 961 MobiDBLite consensus disorder prediction 767 804 - -
Viun3g05273 961 SFLD p-type atpase 375 645 IPR044492 -
Viun3g05273 961 SUPERFAMILY HMA, heavy metal-associated domain 6 74 IPR036163 GO:0046872
Viun3g05273 961 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 1 696 - -
Viun3g05273 961 SFLD Haloacid Dehalogenase 375 645 - -
Viun3g05273 961 FunFam Putative cadmium/zinc-transporting ATPase 3 403 524 - -
Viun3g05273 961 SUPERFAMILY Calcium ATPase, transduction domain A 204 289 IPR008250 -
Viun3g05273 961 SUPERFAMILY HAD-like 391 693 IPR036412 -
Viun3g05273 961 NCBIfam cadmium family heavy metal-translocating P-type ATPase 141 696 - -
Viun3g05273 961 Pfam E1-E2 ATPase 200 370 - -
Viun3g05273 961 NCBIfam HAD-IC family P-type ATPase 164 671 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05273 Viun-Chr3 59222078 59230195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05273 4 961 Primary Pumps ATPases AT4G30110 55.141 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05273 K01534 - gmx:100817567 1222.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05273 3 59222078 59230195 Viun3g05273 3 59222078 59230195 ECH