Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05238 ATGAGGTATATTCGGAACAACAGCTTCAAGAGGCTCTTCTCCTTTGGAAGACGTAGTTCAAAGGAGCAGGTTCTGAGTCCTGACGGTGTAGAAAGTCACGAGACTCTTAAAGAAGAACCTTCCGGAAGACCCTCTTGGAAGTGCTTCTCTTATGAGGACTTGTTTGATGCCACCAATGGCTTCAGCTCAGAAAATTTGGTTGGTAAGGGAGGGTATGCGGAGGTGTACAAGGGAATAATGAATGGGGGAGAAGAAATTGCTGTGAAGAGACTCACAAGAACTTCGAGGGACGAGAGAAAGGAGAAAGAGTTTTTGACAGAGATTGGTACAATTGGTCATGTGAACCATTCCAATGTGTTGCCTCTTCTGGGGTGTTGTATTGACAATGGCCTTTACCTTGTTTTCGAGCTATCTTCTAGAGGTTCTGTTGCATCTCTTCTTCACGATGAAAAGTTGCCCCCTTTAGATTGGAAAACGAGGCACAAGATAGCCATTGGAACAGCACGCGGCCTCCATTACTTGCATAAGGGCTGCAAGAGGAGGATAATCCACCGGGACATTAAGGCATCAAACATTTTGTTAACAAAAGATTTTGAGCCACAGATATCTGATTTTGGACTAGCAAAATGGCTTCCATCTCAGTGGACTCATCATTCCATTGCCCCAATAGAAGGGACATTTGGACATTTGGCCCCAGAGTACTACTTGCATGGAGTTGTGGATGAGAAGACAGATGTGTTTGCCTTTGGTGTGTTCTTGCTGGAAGTAATCTCTGGCAGAAAACCAGTGGATGGGTCACACCAGAGCTTACACAGCTGGGCGAAACCAATTTTGAACAAGGGTGGGATTGAAGAGTTGGTAGATCCAAGGCTTGAAGGAGCTTATGATGTGACAGAGTTAAAAAGATTTTCCTTTGCTGCATCTCTCTGCATTCGGGCTTCTTCAACTTGGCGACCCACCATGACTGAGGTATTAGAGATAATGGAAGAGGGAGAAAAAGATGCAGAAAAGTGGAAAATGCCAGAGGAAGAAGAAGAGGAAGAAGAAGAATTCTGGGGTTTTGAGGATCTGGAATATGAATATGATAGCTCCTTTTCAATGTCATTACTTGACTCCATTGGAAGCACTAGTTAG 1134 0.4427 MRYIRNNSFKRLFSFGRRSSKEQVLSPDGVESHETLKEEPSGRPSWKCFSYEDLFDATNGFSSENLVGKGGYAEVYKGIMNGGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVNHSNVLPLLGCCIDNGLYLVFELSSRGSVASLLHDEKLPPLDWKTRHKIAIGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKGGIEELVDPRLEGAYDVTELKRFSFAASLCIRASSTWRPTMTEVLEIMEEGEKDAEKWKMPEEEEEEEEEFWGFEDLEYEYDSSFSMSLLDSIGSTS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05238 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Viun3g05238 377 Gene3D Phosphorylase Kinase; domain 1 26 136 - -
Viun3g05238 377 ProSitePatterns Protein kinases ATP-binding region signature. 67 89 IPR017441 GO:0005524
Viun3g05238 377 MobiDBLite consensus disorder prediction 27 41 - -
Viun3g05238 377 SMART serkin_6 61 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05238 377 CDD STKc_IRAK 67 330 - -
Viun3g05238 377 MobiDBLite consensus disorder prediction 24 43 - -
Viun3g05238 377 Pfam Protein tyrosine and serine/threonine kinase 64 268 IPR001245 GO:0004672|GO:0006468
Viun3g05238 377 ProSiteProfiles Protein kinase domain profile. 61 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05238 377 FunFam Putative receptor-like serine/threonine-protein kinase 30 137 - -
Viun3g05238 377 PANTHER OS08G0249100 PROTEIN 30 358 IPR046958 -
Viun3g05238 377 Gene3D Transferase(Phosphotransferase) domain 1 139 354 - -
Viun3g05238 377 FunFam Putative receptor-like serine/threonine-protein kinase 139 353 - -
Viun3g05238 377 SUPERFAMILY Protein kinase-like (PK-like) 40 328 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05238 Viun-Chr3 58903218 58907320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05238 47 349 Receptor kinase-like Gene Family AT1G60800 43.408 1.02e-72 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Viun3g05238 PK_Tyr_Ser-Thr 2.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05238 - - gmx:100305398 696.427