Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05233 ATGGAGGAAAAAAGAGAACTTGTATATGAAGTATCTAAGTGGTCTCATGGTGCATCTGAGATGCTGCAGTCATGGAGCCGTCAGGAGATTTTGCAAATATTGTGTGCAGAGATGGGAAAAGAGAGAAAGTATACTGGGTTGACGAAGTTGAAAATTATAGAAAATCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGCCATGAAGCTGCAACAGACCCTGAACCACATTCTTCTTCTCCTGCATCTGGTCAGAAACCTGCTAAAAGGCAGAGAAAATCTGAGAATCCTTCTCACTTACCTGTTCCTGTGACCAGCATTTCAGTCAATAATAATGGTAGTGATTCTGTTAATACTACATACTGCAAGAACTCAGCCTGCAAAGCTACCCTGAATCAAGCAGATGCATTTTGTAAAAGATGTTCATGTTGCATTTGTCATCAATATGATGATAACAAAGACCCTAGCCTGTGGTTAATATGTAGTTCTGAGAATCCATTTCCAGGTGTTTCATGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCTGGAATTGGCAAAGATGGGGAGCGTCCCAAGCTTGATGGAGGCTTCTACTGTGTTGCTTGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATACTAGACGTGTAGATATACTCTGTTATCGTGTCTCCTTAAGCCAGAGACTTTTACAAGGAACTGAAAAGTATGACGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGCCCACTCACTGGCTCACCGGTGAAGATTGGTAGGGGAATTGTGAACAGGCTTTCATCAGGACCTGAGGTTCAGAAGCAATGTGGTTTTGCTCTTGAATCGCTTGATTCACTGCTTTCGAAAAGGATCTTGCCATCATCACCCAATCCAACAACTCAAGGTGCACATTTGCTGACTCCAAATATGGTGAGGTTTGAAGATGTCACCGCCACATCCCTCACTATTATTTTGGGTTCCGAAGAACCCTGTGGTGAAAACATCCCTGCTTACACCATGTGGTACCGCAAAGCTGATGAAGTGGAGTATCCGATGGAGCCGACATGCACCTCGCTCGTACCAAATAGAAGGTTCAGTGTGAGAGGTCTACTTCCAGGTACAGAGTACAGTTTCAAAGTTGTTCCAAATGATTCGAGGGAGTCAGGTGTGTGCGAAGTTCAAATCTCAACAGAGCTTGGCGAGGATGAAGTTCCTAATTGCTCAGCAACAGAGAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCTTTCCAATCCGTCATCAGTGGAAGATGAAACTAATAACTGCAATCCATACAGTGAGCTGACCGATAACCACCGAGCAGGTCATTATCCTTCTTTTCGCAAGGAAAGCGACCAGCTTGCTTCTGGAAATTTATCTAATGATGCTGTTAACTGTTCCAACATAGATGTTGTGGGTATTCCTCCTGATGCAGATTCTTTGTCAGACAAGCAGCATGCTACAGGAATGGCTGCCTCCATACCCAGTTCCGATGTGCTAAAGCTGGAAGACAAGCACTCGCCGGAGGAACAAGTGACCGAGGACATCATGAGCATTGACGAAGGTTTGAATTCCCCAGTTGTAACGGGCAGGGAATGTGTGCCGTTGGTAGGTAGCTCGGAAGGAGGGTTACCAAATACTCCGTGCAAGTTGGAAAGCCTTAAAGATGGTGCAGGAAGGATTGGAAGATCGAAATCGAGTGCGAAAGATCAAGAAAATGGATCAGGGAAAAGGGAGGGTCCCCAGGATGGAAGCACATCGAAGAAGAGAAGCGGAGAAAGACAAGATGAAGGGCGCATCACGAATGGGTTTTCGGAGCGTGATTTTGAGTATTATGTGAAGGTGATTAGGTGGTTAGAGTGTGAAGGGCACATAGAGAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCCACCCCTCAAGAAGTTAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAACAACTTGTGGACACCTTCTCAGAATGTATATCCAGCAAGAGAATATCAGTGGTTCCGGCGGGGTTCTGCATGAAGCTTTGGCATTGA 2163 0.4429 MEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGHEAATDPEPHSSSPASGQKPAKRQRKSENPSHLPVPVTSISVNNNGSDSVNTTYCKNSACKATLNQADAFCKRCSCCICHQYDDNKDPSLWLICSSENPFPGVSCGLSCHLECALKHDGSGIGKDGERPKLDGGFYCVACGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEKYDELYKIVDEAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKQCGFALESLDSLLSKRILPSSPNPTTQGAHLLTPNMVRFEDVTATSLTIILGSEEPCGENIPAYTMWYRKADEVEYPMEPTCTSLVPNRRFSVRGLLPGTEYSFKVVPNDSRESGVCEVQISTELGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSELTDNHRAGHYPSFRKESDQLASGNLSNDAVNCSNIDVVGIPPDADSLSDKQHATGMAASIPSSDVLKLEDKHSPEEQVTEDIMSIDEGLNSPVVTGRECVPLVGSSEGGLPNTPCKLESLKDGAGRIGRSKSSAKDQENGSGKREGPQDGSTSKKRSGERQDEGRITNGFSERDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRISVVPAGFCMKLWH 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05233 720 MobiDBLite consensus disorder prediction 422 472 - -
Viun3g05233 720 Gene3D Immunoglobulins 325 423 IPR013783 -
Viun3g05233 720 MobiDBLite consensus disorder prediction 422 462 - -
Viun3g05233 720 Pfam PHD - plant homeodomain finger protein 122 241 IPR032881 -
Viun3g05233 720 SUPERFAMILY Fibronectin type III 327 405 IPR036116 GO:0005515
Viun3g05233 720 CDD PHD_VIN3_plant 142 207 - -
Viun3g05233 720 CDD FN3 328 408 IPR003961 GO:0005515
Viun3g05233 720 MobiDBLite consensus disorder prediction 564 627 - -
Viun3g05233 720 MobiDBLite consensus disorder prediction 583 627 - -
Viun3g05233 720 ProSiteProfiles Fibronectin type-III domain profile. 327 422 IPR003961 GO:0005515
Viun3g05233 720 MobiDBLite consensus disorder prediction 64 111 - -
Viun3g05233 720 PANTHER VIN3-LIKE PROTEIN 2-RELATED 1 720 IPR044514 GO:0010048|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05233 Viun-Chr3 58874660 58879448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05233 1 588 PHD Gene Family AT4G30200 48.232 1.73e-160 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05233 - - gmx:100794721 1303.89