Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05231 ATGGCTACAGATTCGTCTTTTGAGGGTCTTGCTCTTGATCCTTCCAAGTGCAGTAAATTGAGTATGGAGGAAAAAAGAGAACTTGTATATGAAGTATCTAAGTGGTCTCATGGTGCATCTGAGATGCTGCAGTCATGGAGCCGTCAGGAGATTTTGCAAATATTGTGTGCAGAGATGGGAAAAGAGAGAAAGTATACTGGGTTGACGAAGTTGAAAATTATAGAAAATCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGCCATGAAGCTGCAACAGACCCTGAACCACATTCTTCTTCTCCTGCATCTGGTCAGAAACCTGCTAAAAGGCAGAGAAAATCTGAGAATCCTTCTCACTTACCTGTTCCTGTGACCAGCATTTCAGTCAATAATAATGGTAGTGATTCTGTTAATACTACATACTGCAAGAACTCAGCCTGCAAAGCTACCCTGAATCAAGCAGATGCATTTTGTAAAAGATGTTCATGTTGCATTTGTCATCAATATGATGATAACAAAGACCCTAGCCTGTGGTTAATATGTAGTTCTGAGAATCCATTTCCAGGTGTTTCATGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCTGGAATTGGCAAAGATGGGGAGCGTCCCAAGCTTGATGGAGGCTTCTACTGTGTTGCTTGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATACTAGACGTGTAGATATACTCTGTTATCGTGTCTCCTTAAGCCAGAGACTTTTACAAGGAACTGAAAAGTATGACGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGCCCACTCACTGGCTCACCGGTGAAGATTGGTAGGGGAATTGTGAACAGGCTTTCATCAGGACCTGAGGTTCAGAAGCAATGTGGTTTTGCTCTTGAATCGCTTGATTCACTGCTTTCGAAAAGGATCTTGCCATCATCACCCAATCCAACAACTCAAGGTGCACATTTGCTGACTCCAAATATGGTGAGGTTTGAAGATGTCACCGCCACATCCCTCACTATTATTTTGGGTTCCGAAGAACCCTGTGGTGAAAACATCCCTGCTTACACCATGTGGTACCGCAAAGCTGATGAAGTGGAGTATCCGATGGAGCCGACATGCACCTCGCTCGTACCAAATAGAAGGTTCAGTGTGAGAGGTCTACTTCCAGGTACAGAGTACAGTTTCAAAGTTGTTCCAAATGATTCGAGGGAGTCAGGTGTGTGCGAAGTTCAAATCTCAACAGAGCTTGGCGAGGATGAAGTTCCTAATTGCTCAGCAACAGAGAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCTTTCCAATCCGTCATCAGTGGAAGATGAAACTAATAACTGCAATCCATACAGTGAGCTGACCGATAACCACCGAGCAGATTCTTTGTCAGACAAGCAGCATGCTACAGGAATGGCTGCCTCCATACCCAGTTCCGATGTGCTAAAGCTGGAAGACAAGCACTCGCCGGAGGAACAAGTGACCGAGGACATCATGAGCATTGACGAAGGTTTGAATTCCCCAGTTGTAACGGGCAGGGAATGTGTGCCGTTGGTAGGTAGCTCGGAAGGAGGGTTACCAAATACTCCGTGCAAGTTGGAAAGCCTTAAAGATGGTGCAGGAAGGATTGGAAGATCGAAATCGAGTGCGAAAGATCAAGAAAATGGATCAGGGAAAAGGGAGGGTCCCCAGGATGGAAGCACATCGAAGAAGAGAAGCGGAGAAAGACAAGATGAAGGGCGCATCACGAATGGGTTTTCGGAGCGTGATTTTGAGTATTATGTGAAGGTGATTAGGTGGTTAGAGTGTGAAGGGCACATAGAGAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCCACCCCTCAAGAAGTTAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAACAACTTGTGGACACCTTCTCAGAATGTATATCCAGCAAGAGAATATCAGTGGTTCCGGCGGGGTTCTGCATGAAGCTTTGGCATTGA 2115 0.444 MATDSSFEGLALDPSKCSKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGHEAATDPEPHSSSPASGQKPAKRQRKSENPSHLPVPVTSISVNNNGSDSVNTTYCKNSACKATLNQADAFCKRCSCCICHQYDDNKDPSLWLICSSENPFPGVSCGLSCHLECALKHDGSGIGKDGERPKLDGGFYCVACGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEKYDELYKIVDEAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKQCGFALESLDSLLSKRILPSSPNPTTQGAHLLTPNMVRFEDVTATSLTIILGSEEPCGENIPAYTMWYRKADEVEYPMEPTCTSLVPNRRFSVRGLLPGTEYSFKVVPNDSRESGVCEVQISTELGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSELTDNHRADSLSDKQHATGMAASIPSSDVLKLEDKHSPEEQVTEDIMSIDEGLNSPVVTGRECVPLVGSSEGGLPNTPCKLESLKDGAGRIGRSKSSAKDQENGSGKREGPQDGSTSKKRSGERQDEGRITNGFSERDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRISVVPAGFCMKLWH 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05231 704 MobiDBLite consensus disorder prediction 567 611 - -
Viun3g05231 704 MobiDBLite consensus disorder prediction 85 132 - -
Viun3g05231 704 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 704 IPR044514 GO:0010048|GO:0040029
Viun3g05231 704 MobiDBLite consensus disorder prediction 548 611 - -
Viun3g05231 704 MobiDBLite consensus disorder prediction 444 486 - -
Viun3g05231 704 CDD PHD_VIN3_plant 163 228 - -
Viun3g05231 704 Pfam PHD - plant homeodomain finger protein 143 262 IPR032881 -
Viun3g05231 704 SUPERFAMILY Fibronectin type III 348 426 IPR036116 GO:0005515
Viun3g05231 704 Gene3D Immunoglobulins 346 444 IPR013783 -
Viun3g05231 704 ProSiteProfiles Fibronectin type-III domain profile. 348 443 IPR003961 GO:0005515
Viun3g05231 704 CDD FN3 349 429 IPR003961 GO:0005515
Viun3g05231 704 MobiDBLite consensus disorder prediction 444 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05231 Viun-Chr3 58874169 58879448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05231 4 572 PHD Gene Family AT4G30200 50.246 1.44e-171 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05231 - - gmx:100794721 1269.99