Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05230 ATGGCTACAGATTCGTCTTTTGAGGGTCTTGCTCTTGATCCTTCCAAGTGCAGTAAATTGAGTATGGAGGAAAAAAGAGAACTTGTATATGAAGTATCTAAGTGGTCTCATGGTGCATCTGAGATGCTGCAGTCATGGAGCCGTCAGGAGATTTTGCAAATATTGTGTGCAGAGATGGGAAAAGAGAGAAAGTATACTGGGTTGACGAAGTTGAAAATTATAGAAAATCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGCCATGAAGCTGCAACAGACCCTGAACCACATTCTTCTTCTCCTGCATCTGGTCAGAAACCTGCTAAAAGGCAGAGAAAATCTGAGAATCCTTCTCACTTACCTGTTCCTGTGACCAGCATTTCAGTCAATAATAATGGTAGTGATTCTGTTAATACTACATACTGCAAGAACTCAGCCTGCAAAGCTACCCTGAATCAAGCAGATGCATTTTGTAAAAGATGTTCATGTTGCATTTGTCATCAATATGATGATAACAAAGACCCTAGCCTGTGGTTAATATGTAGTTCTGAGAATCCATTTCCAGGTGTTTCATGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCTGGAATTGGCAAAGATGGGGAGCGTCCCAAGCTTGATGGAGGCTTCTACTGTGTTGCTTGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATACTAGACGTGTAGATATACTCTGTTATCGTGTCTCCTTAAGCCAGAGACTTTTACAAGGAACTGAAAAGTATGACGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGCCCACTCACTGGCTCACCGGTGAAGATTGGTAGGGGAATTGTGAACAGGCTTTCATCAGGACCTGAGGTTCAGAAGCAATGTGGTTTTGCTCTTGAATCGCTTGATTCACTGCTTTCGAAAAGGATCTTGCCATCATCACCCAATCCAACAACTCAAGGTGCACATTTGCTGACTCCAAATATGGTGAGGTTTGAAGATGTCACCGCCACATCCCTCACTATTATTTTGGGTTCCGAAGAACCCTGTGGTGAAAACATCCCTGCTTACACCATGTGGTACCGCAAAGCTGATGAAGTGGAGTATCCGATGGAGCCGACATGCACCTCGCTCGTACCAAATAGAAGGTTCAGTGTGAGAGGTCTACTTCCAGGTACAGAGTACAGTTTCAAAGTTGTTCCAAATGATTCGAGGGAGTCAGGTGTGTGCGAAGTTCAAATCTCAACAGAGCTTGGCGAGGATGAAGTTCCTAATTGCTCAGCAACAGAGAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCTTTCCAATCCGTCATCAGTGGAAGATGAAACTAATAACTGCAATCCATACAGTGAGCTGACCGATAACCACCGAGCAGATGTTGTGGGTATTCCTCCTGATGCAGATTCTTTGTCAGACAAGCAGCATGCTACAGGAATGGCTGCCTCCATACCCAGTTCCGATGTGCTAAAGCTGGAAGACAAGCACTCGCCGGAGGAACAAGTGACCGAGGACATCATGAGCATTGACGAAGGTTTGAATTCCCCAGTTGTAACGGGCAGGGAATGTGTGCCGTTGGTAGGTAGCTCGGAAGGAGGGTTACCAAATACTCCGTGCAAGTTGGAAAGCCTTAAAGATGGTGCAGGAAGGATTGGAAGATCGAAATCGAGTGCGAAAGATCAAGAAAATGGATCAGGGAAAAGGGAGGGTCCCCAGGATGGAAGCACATCGAAGAAGAGAAGCGGAGAAAGACAAGATGAAGGGCGCATCACGAATGGGTTTTCGGAGCGTGATTTTGAGTATTATGTGAAGGTGATTAGGTGGTTAGAGTGTGAAGGGCACATAGAGAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCCACCCCTCAAGAAGTTAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAACAACTTGTGGACACCTTCTCAGAATGTATATCCAGCAAGAGAATATCAGTGGTTCCGGCGGGGTTCTGCATGAAGCTTTGGCATTGA 2142 0.4444 MATDSSFEGLALDPSKCSKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGHEAATDPEPHSSSPASGQKPAKRQRKSENPSHLPVPVTSISVNNNGSDSVNTTYCKNSACKATLNQADAFCKRCSCCICHQYDDNKDPSLWLICSSENPFPGVSCGLSCHLECALKHDGSGIGKDGERPKLDGGFYCVACGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEKYDELYKIVDEAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKQCGFALESLDSLLSKRILPSSPNPTTQGAHLLTPNMVRFEDVTATSLTIILGSEEPCGENIPAYTMWYRKADEVEYPMEPTCTSLVPNRRFSVRGLLPGTEYSFKVVPNDSRESGVCEVQISTELGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSELTDNHRADVVGIPPDADSLSDKQHATGMAASIPSSDVLKLEDKHSPEEQVTEDIMSIDEGLNSPVVTGRECVPLVGSSEGGLPNTPCKLESLKDGAGRIGRSKSSAKDQENGSGKREGPQDGSTSKKRSGERQDEGRITNGFSERDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRISVVPAGFCMKLWH 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05230 713 MobiDBLite consensus disorder prediction 85 132 - -
Viun3g05230 713 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 713 IPR044514 GO:0010048|GO:0040029
Viun3g05230 713 MobiDBLite consensus disorder prediction 444 476 - -
Viun3g05230 713 CDD PHD_VIN3_plant 163 228 - -
Viun3g05230 713 Pfam PHD - plant homeodomain finger protein 143 262 IPR032881 -
Viun3g05230 713 SUPERFAMILY Fibronectin type III 348 426 IPR036116 GO:0005515
Viun3g05230 713 Gene3D Immunoglobulins 346 444 IPR013783 -
Viun3g05230 713 ProSiteProfiles Fibronectin type-III domain profile. 348 443 IPR003961 GO:0005515
Viun3g05230 713 CDD FN3 349 429 IPR003961 GO:0005515
Viun3g05230 713 MobiDBLite consensus disorder prediction 557 620 - -
Viun3g05230 713 MobiDBLite consensus disorder prediction 576 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05230 Viun-Chr3 58874169 58879448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05230 4 581 PHD Gene Family AT4G30200 49.513 6.53e-170 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05230 - - gmx:100794721 1286.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05230 3 58874169 58879448 Viun3g05230 3 58874169 58879448 ECH