Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05229 ATGGCTACAGATTCGTCTTTTGAGGGTCTTGCTCTTGATCCTTCCAAGTGCAGTAAATTGAGTATGGAGGAAAAAAGAGAACTTGTATATGAAGTATCTAAGTGGTCTCATGGTGCATCTGAGATGCTGCAGTCATGGAGCCGTCAGGAGATTTTGCAAATATTGTGTGCAGAGATGGGAAAAGAGAGAAAGTATACTGGGTTGACGAAGTTGAAAATTATAGAAAATCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGCCATGAAGCTGCAACAGACCCTGAACCACATTCTTCTTCTCCTGCATCTGGTCAGAAACCTGCTAAAAGGCAGAGAAAATCTGAGAATCCTTCTCACTTACCTGTTCCTGTGACCAGCATTTCAGTCAATAATAATGGTAGTGATTCTGTTAATACTACATACTGCAAGAACTCAGCCTGCAAAGCTACCCTGAATCAAGCAGATGCATTTTGTAAAAGATGTTCATGTTGCATTTGTCATCAATATGATGATAACAAAGACCCTAGCCTGTGGTTAATATGTAGTTCTGAGAATCCATTTCCAGGTGTTTCATGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCTGGAATTGGCAAAGATGGGGAGCGTCCCAAGCTTGATGGAGGCTTCTACTGTGTTGCTTGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATACTAGACGTGTAGATATACTCTGTTATCGTGTCTCCTTAAGCCAGAGACTTTTACAAGGAACTGAAAAGTATGACGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGCCCACTCACTGGCTCACCGGTGAAGATTGGTAGGGGAATTGTGAACAGGCTTTCATCAGGACCTGAGGTTCAGAAGCAATGTGGTTTTGCTCTTGAATCGCTTGATTCACTGCTTTCGAAAAGGATCTTGCCATCATCACCCAATCCAACAACTCAAGGTGCACATTTGCTGACTCCAAATATGGTGAGGTTTGAAGATGTCACCGCCACATCCCTCACTATTATTTTGGGTTCCGAAGAACCCTGTGGTGAAAACATCCCTGCTTACACCATGTGGTACCGCAAAGCTGATGAAGTGGAGTATCCGATGGAGCCGACATGCACCTCGCTCGTACCAAATAGAAGGTTCAGTGTGAGAGGTCTACTTCCAGGTACAGAGTACAGTTTCAAAGTTGTTCCAAATGATTCGAGGGAGTCAGGTGTGTGCGAAGTTCAAATCTCAACAGAGCTTGGCGAGGATGAAGTTCCTAATTGCTCAGCAACAGAGAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCTTTCCAATCCGTCATCAGTGGAAGATGAAACTAATAACTGCAATCCATACAGTGAGCTGACCGATAACCACCGAGCAGGTCATTATCCTTCTTTTCGCAAGGAAAGCGACCAGCTTGCTTCTGGAAATTTATCTAATGATGCTGTTAACTGTTCCAACATAGATGTTGTGGGTATTCCTCCTGATGCAGATTCTTTGTCAGACAAGCAGCATGCTACAGGAATGGCTGCCTCCATACCCAGTTCCGATGTGCTAAAGCTGGAAGACAAGCACTCGCCGGAGGAACAAGTGACCGAGGACATCATGAGCATTGACGAAGGTTTGAATTCCCCAGTTGTAACGGGCAGGGAATGTGTGCCGTTGGTAGGTAGCTCGGAAGGAGGGTTACCAAATACTCCGTGCAAGTTGGAAAGCCTTAAAGATGGTGCAGGAAGGATTGGAAGATCGAAATCGAGTGCGAAAGATCAAGAAAATGGATCAGGGAAAAGGGAGGGTCCCCAGGATGGAAGCACATCGAAGAAGAGAAGCGGAGAAAGACAAGATGAAGGGCGCATCACGAATGGGTTTTCGGAGCGTGATTTTGAGTATTATGTGAAGGTGATTAGGTGGTTAGAGTGTGAAGGGCACATAGAGAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCCACCCCTCAAGAAGTTAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAACAACTTGTGGACACCTTCTCAGAATGTATATCCAGCAAGAGAATATCAGTGGTTCCGGCGGGGTTCTGCATGAAGCTTTGGCATTGA 2226 0.4425 MATDSSFEGLALDPSKCSKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGHEAATDPEPHSSSPASGQKPAKRQRKSENPSHLPVPVTSISVNNNGSDSVNTTYCKNSACKATLNQADAFCKRCSCCICHQYDDNKDPSLWLICSSENPFPGVSCGLSCHLECALKHDGSGIGKDGERPKLDGGFYCVACGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEKYDELYKIVDEAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKQCGFALESLDSLLSKRILPSSPNPTTQGAHLLTPNMVRFEDVTATSLTIILGSEEPCGENIPAYTMWYRKADEVEYPMEPTCTSLVPNRRFSVRGLLPGTEYSFKVVPNDSRESGVCEVQISTELGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSELTDNHRAGHYPSFRKESDQLASGNLSNDAVNCSNIDVVGIPPDADSLSDKQHATGMAASIPSSDVLKLEDKHSPEEQVTEDIMSIDEGLNSPVVTGRECVPLVGSSEGGLPNTPCKLESLKDGAGRIGRSKSSAKDQENGSGKREGPQDGSTSKKRSGERQDEGRITNGFSERDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRISVVPAGFCMKLWH 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05229 741 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 741 IPR044514 GO:0010048|GO:0040029
Viun3g05229 741 MobiDBLite consensus disorder prediction 85 132 - -
Viun3g05229 741 Pfam PHD - plant homeodomain finger protein 143 262 IPR032881 -
Viun3g05229 741 SUPERFAMILY Fibronectin type III 348 426 IPR036116 GO:0005515
Viun3g05229 741 Gene3D Immunoglobulins 346 444 IPR013783 -
Viun3g05229 741 MobiDBLite consensus disorder prediction 585 648 - -
Viun3g05229 741 MobiDBLite consensus disorder prediction 443 483 - -
Viun3g05229 741 MobiDBLite consensus disorder prediction 443 493 - -
Viun3g05229 741 CDD PHD_VIN3_plant 163 228 - -
Viun3g05229 741 ProSiteProfiles Fibronectin type-III domain profile. 348 443 IPR003961 GO:0005515
Viun3g05229 741 MobiDBLite consensus disorder prediction 604 648 - -
Viun3g05229 741 CDD FN3 349 429 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05229 Viun-Chr3 58874169 58879448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05229 4 609 PHD Gene Family AT4G30200 48.523 7.55e-168 495