Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05228 ATGGACTCTTCTTCATCACCGCCAAACAACAACAACTCTCTCGCTTTCTCTCTTTCCAATCACTTCCCAAACCCTTCTTCCTCTCACTCTACCTCTCCTCTCTCCCTTTTCCACTCCTTCACCTCCTATCCATCTCTCACCCTCACAGGCAACAGCACGGTGGATGCACCACCGGAGGCAGCAGGCCGCGGAGGGGCCACCAACCTCTCCATATTCACCGCTGCTCCCAAGTTCGAGGACTTTCTAGGCGGTTCCGCCACAGCAGACACCACCGCCACGGCTGCACCGCCACAACTCCCGCAGTTCTCCACTGACAACAACCTATACGAATCGGAGCTGAAGACAACTATAGCCGCGTGCTTTCCTCGCGGCTTCGCCGCAGAAACAAGCACCGAACCTCAAAAGCCGTCTCCGAAGAAAACCGTGGACACCTTCGGCCAGCGCACTTCCATCTACCGTGGCGTCACCAGGCACAGATGGACCGGGAGATATGAAGCTCATCTATGGGACAATAGTTGTAGAAGGGAAGGACAGAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGATAAGGCAGCTAGAGCTTACGACCTCGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTTCCGATTTCCAACTATGAGAAGGAGCTGGGGGAGATGAAGAACATGACGAGGCAAGAGTTTGTTGCTTCTCTGCGAAGGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACTCAAGAGGAAGCTGCGGAGGCCTATGACATTGCAGCTATCAAATTCAGGGGGTTAAATGCAGTGACAAACTTCGACATGAGTCGCTACGACGTGAAGAGCATTGCGAACAGCACACTTCCCATTGGGGGTTTATCCAGCAAGAACAAAACCTCCGGAGATTCTGCATCTGAGAGCAAAAGCCACGAGGCAAGCCGATCCGACGAACGAGATCCATCGTCAGCTTCATCCGTGACCTTTGGATCACAGCAGCAGCAGCAGCAGCCTTCCAGCTCTACCTTAAGCTTTGCCATCCCTATCAAGCAAGACCCTTCAGATTACTGGTCCATCCTGGGGTACCACAATCCTACCCTGGACAACAGGGGGGTCAGGAACACTACCAGTGTTACTACAACTTCACCCTTCCAAATGGACCTCTCAAGTGCCCCCTCAAGTACCGGCAGTGAAAACAACGCCGCGTTTTTCAGTGGAGGAGGCGTCTTTGTTCAGCAACAAAGTGCTCATGGTCACGCTAATGCTAATGGTCATGGTCATGGAAATGGAAGCAGTGGTTCTTTAAGCTGTTCAATCCCATTCGCCACGCCCATCTTTTCTCTAAATAGCAATACTAGTTATGAGAGCAGTGCTGGTTACGGCAACTGGATTGGACCTACTCTGCACACATTCCAATCCCATGCAAAACCAAGTCTCTTTCAAACCCCAATATTTGGCATGGAATGA 1575 0.5175 MDSSSSPPNNNNSLAFSLSNHFPNPSSSHSTSPLSLFHSFTSYPSLTLTGNSTVDAPPEAAGRGGATNLSIFTAAPKFEDFLGGSATADTTATAAPPQLPQFSTDNNLYESELKTTIAACFPRGFAAETSTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELGEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSSKNKTSGDSASESKSHEASRSDERDPSSASSVTFGSQQQQQQPSSSTLSFAIPIKQDPSDYWSILGYHNPTLDNRGVRNTTSVTTTSPFQMDLSSAPSSTGSENNAAFFSGGGVFVQQQSAHGHANANGHGHGNGSSGSLSCSIPFATPIFSLNSNTSYESSAGYGNWIGPTLHTFQSHAKPSLFQTPIFGME 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05228 524 ProSiteProfiles AP2/ERF domain profile. 253 311 IPR001471 GO:0003700|GO:0006355
Viun3g05228 524 SMART rav1_2 253 317 IPR001471 GO:0003700|GO:0006355
Viun3g05228 524 SMART rav1_2 151 223 IPR001471 GO:0003700|GO:0006355
Viun3g05228 524 MobiDBLite consensus disorder prediction 356 378 - -
Viun3g05228 524 ProSiteProfiles AP2/ERF domain profile. 151 217 IPR001471 GO:0003700|GO:0006355
Viun3g05228 524 CDD AP2 252 313 IPR001471 GO:0003700|GO:0006355
Viun3g05228 524 Pfam AP2 domain 253 303 IPR001471 GO:0003700|GO:0006355
Viun3g05228 524 Pfam AP2 domain 151 209 IPR001471 GO:0003700|GO:0006355
Viun3g05228 524 MobiDBLite consensus disorder prediction 1 29 - -
Viun3g05228 524 MobiDBLite consensus disorder prediction 326 378 - -
Viun3g05228 524 PRINTS Ethylene responsive element binding protein signature 293 313 IPR001471 GO:0003700|GO:0006355
Viun3g05228 524 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Viun3g05228 524 FunFam AP2-like ethylene-responsive transcription factor ANT 150 219 - -
Viun3g05228 524 FunFam AP2-like ethylene-responsive transcription factor 252 313 - -
Viun3g05228 524 CDD AP2 150 219 IPR001471 GO:0003700|GO:0006355
Viun3g05228 524 Gene3D AP2/ERF domain 151 219 IPR036955 GO:0003700|GO:0006355
Viun3g05228 524 Gene3D AP2/ERF domain 253 313 IPR036955 GO:0003700|GO:0006355
Viun3g05228 524 SUPERFAMILY DNA-binding domain 150 219 IPR016177 GO:0003677
Viun3g05228 524 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 76 405 - -
Viun3g05228 524 SUPERFAMILY DNA-binding domain 252 313 IPR016177 GO:0003677
Viun3g05228 524 MobiDBLite consensus disorder prediction 340 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05228 Viun-Chr3 58853201 58856765 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05228 96 524 AP2-EREBP Transcription Factor Family AT5G57390 55.679 1.31e-143 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Viun3g05228 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05228 K09285 - gmx:100797828 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05228 3 58853201 58856765 Viun3g05228 3 58853201 58856765 ECH