Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05227 ATGTATTCGAGTCCGAGCCAGTTCGATGGCAACGCAGCCTTCTCCGGCGGCGGATTTATGCCTTCTCAGGCCACTCAGGGCACTGATCCTTCATTGGTTACCTCGAAGAATCGCGATGCTCAGTCCCTGCTTCCTCTAACAGTGAAGCAAATACACGATGCACTTCAATCGAGCGATGATAAAGCCAATTTGATTATTGACGGTGTGGACGTTAATAATGTTACTCTTATAGGAAGGGTGTGCAACAAAGCCGGACGAGTTACTGATGTTACTTTTGTGCTTGATGATGGTACTGGGAAGATTGAGTGTAATAAATGGTTTCATGAAGCTGCTGATACAAATGAAGCAGAGGCTATCTTGGACGGAATGTATGCGAGGCTCCATGGACACTTGAAAAACTTCCAGGGTAAAAGGACCTTAAATATTTTCCATTTCAGGCCCGTGACTGACTTTAACGAGGTTGCGAGTCATTTCATCGATTGCATACATGTGCATCTCCACAATTCCAGGATTCGGAGCAGTGTCCTTAATCAGCAACATGTTATGAATTCTACGCCAATTACTCCCGCAATGGGTTATCAAGCTCAAGTTGTTCCACCAGCAAATGACTTCTCTGATCAACATGTCAATGGCCAGAAGAGTGCTGAAAATATGATCTTAGATTTTCTGCATCTTCCCGCCAACAGGTCAAGGAATGAGGGAGTCCATCGTGATCTTATTGCACAGCATCTTCAAATTTCTTTAGAGAAGCTCATGCTGGCTATCAAAAGTCTTATCGATGAAGGTGCCGTTTATGAAACCATAGCTGATCACTATAAGTCAATAATCAATGGTTGA 837 0.4373 MYSSPSQFDGNAAFSGGGFMPSQATQGTDPSLVTSKNRDAQSLLPLTVKQIHDALQSSDDKANLIIDGVDVNNVTLIGRVCNKAGRVTDVTFVLDDGTGKIECNKWFHEAADTNEAEAILDGMYARLHGHLKNFQGKRTLNIFHFRPVTDFNEVASHFIDCIHVHLHNSRIRSSVLNQQHVMNSTPITPAMGYQAQVVPPANDFSDQHVNGQKSAENMILDFLHLPANRSRNEGVHRDLIAQHLQISLEKLMLAIKSLIDEGAVYETIADHYKSIING 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05227 278 Pfam Replication protein A C terminal 165 270 IPR014892 -
Viun3g05227 278 FunFam Replication protein A 32 kDa subunit 207 276 - -
Viun3g05227 278 MobiDBLite consensus disorder prediction 13 34 - -
Viun3g05227 278 Gene3D - 35 170 IPR012340 -
Viun3g05227 278 Gene3D - 206 276 IPR036388 -
Viun3g05227 278 MobiDBLite consensus disorder prediction 18 34 - -
Viun3g05227 278 SUPERFAMILY "Winged helix" DNA-binding domain 210 275 IPR036390 -
Viun3g05227 278 FunFam replication protein A 32 kDa subunit A-like 36 170 - -
Viun3g05227 278 Pfam OB-fold nucleic acid binding domain 74 142 IPR004365 GO:0003676
Viun3g05227 278 PIRSF RPA32 2 276 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Viun3g05227 278 PANTHER REPLICATION PROTEIN A-RELATED 7 275 IPR040260 -
Viun3g05227 278 CDD RPA2_DBD_D 73 166 - -
Viun3g05227 278 SUPERFAMILY Nucleic acid-binding proteins 43 169 IPR012340 -
Viun3g05227 278 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05227 Viun-Chr3 58830363 58836988 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05227 1 275 Core DNA Replication Machinery Family AT2G24490 45.683 1.72e-82 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05227 K10739 - gmx:100782819 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05227 3 58830363 58836988 Viun3g05227 3 58830363 58836988 ECH