Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05222 ATGGCTTTCTATGCTGGTAACACCACCAATTGTAACAACAAATTCCGAGGATTCCCAGGGTTTGAGGACGATGATGTTGTGTCCACTGTGGTTCCCGCTGTAACAGTTGTGGTAGAGGGTCGTTCCATCTGCCAGCGCATCAGCCTCCATAACCATGGTAGCTACGAAAGTATGGCCAAAGCCCTACGCGAAATGTTTGTGGAAAACGCTGGAGACAGTGATGATCTTGACCTTTCCAATGTCATTCCTGGCTACCTTATTGCCTATGAAGACATGGACAACGATCTTCTTCTAGTCGGTGACCTTAGCTGGAAGGATTTTGTACGTGTGGCAAAGAGAATTCGTATAATTCCAACCAAGGGTAACTCAAGAAAAGGTTCAACGAGAGCGGCGTAA 396 0.4672 MAFYAGNTTNCNNKFRGFPGFEDDDVVSTVVPAVTVVVEGRSICQRISLHNHGSYESMAKALREMFVENAGDSDDLDLSNVIPGYLIAYEDMDNDLLLVGDLSWKDFVRVAKRIRIIPTKGNSRKGSTRAA 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05222 131 ProSiteProfiles PB1 domain profile. 31 121 IPR000270 GO:0005515
Viun3g05222 131 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 33 119 IPR003311 GO:0005634|GO:0006355
Viun3g05222 131 Pfam AUX/IAA family 31 118 IPR033389 -
Viun3g05222 131 Gene3D - 28 129 - -
Viun3g05222 131 SUPERFAMILY CAD & PB1 domains 36 116 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05222 34 119 B3 DNA Binding Superfamily AT2G46530 29.070 7.33e-06 42.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun3g05222 AUX_IAA 5.9e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05222 - - vra:106766495 198.749