Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05214 ATGGATACTGACGAGGAGTGCTCAATTGTTCTTGAATTACCTGAAAGTGATCCTTTCTTTGACAAAAAGAAGAAATTACTACAAAGTAAGGGTTTTAGTCCCAAAGAACGGATATACCTCAGGAGTTCTTCAAAACCTGGCTGGATGAGTGCTACTGTGCAGGTGTTAGTTCAGATTGCTCGTATCATACAATTAAATGAGCTGGAACTTTATTTTGCTGAAGAGGACGTATGCACAGCAAAGGAATTTTACAGTCCCAGGAATGAGTTGGAGGCTCTCAATTCAATTGTTTTGCTCACTGACATATCACTTTCTAGTTGTACACATCTCCATACAAATATCCTGCAAGGGTTACGCCAAACAGTTCTTGATTTAATTACTGATTTGGGGGACAAAAACAGTGTGAAGGGAGTAGTTGAAAAAGACCATAGTTGTGATCAAGAAGAACGCCTGATAGAATGGGGTGAAAGCAATGGCGTAAAGACACAGTTAAAAATAGCTTATACTGAACGAGCTGGTCGAGGTGCAATAGCAAGGAAAGATCTAAACGTTGGAGATATTGCTTTGGAAATTCCTGTGTCCATTATCATTTCTGAGGAGCTTATTCATGAAACTCAAATGTATGGTGTCTTGAAAGAAATTGACGGCATATCATCTGAGACAATATTGCTATTATGGAGTATGAAAGAAAAGTACAACAGTGATTCAAAATTCAAAATTTATTTTGACACACTCCCAGAAAAATTTAATACAGGTTTGAGTTTCAGCATTGAAGCAATTACAGTGTTAGATGGAACCTTACTGTTGGAAGAGATAATGCAAGCAAGACAGCACCTGCATGCTCAATATGATGAGTTGTTCCCTGCTCTGTGCAATACTTTTCCTGATATATTTCCACCAGAGCTGTACACATGGGAGAAATTTTTATGGGCTTGTGAACTTTGGTACTCTAATAGCATGAAGATAATGTATTCCGATGGAAAGATAAAAACATGCTTGATCCCTATTGCTGGCTTTCTCAATCATTCGCTGTGCCCGCATGTTATGCACTATGGCCAAGTGGATAGTGCAAATAATTCACTGAAATTTTGTCTATCAAGACCATGCAAATCTGGAGAAGAATGCTGCTTAAGCTACGGCAACTTCTCCAGCTCTCATTTAATTACCTTTTATGGTTTTTTACCACAAGGAGACAACCCATATGATGTTATTCCGTTAGACATTGACGGTGCCGACGTTGATTCTAATGAGGATATACCCGAGTCCAACTGGACGAGTCACATGGTGCGTGGTACCTGGCTCTCCAGGGATCACAAGATGTTCTACTATGGTCTTCCCTCTCCATTATTGGACCATCTTCGGAGATCTCGAAGTCCAATGCTGCGACCAAAAACCTTTTTGCAAGAAAACTTGGAAAATGAGCTTGGAGTTCTTGAAAATCTCAAAGATATCTTCGATGACATGATCGAAAATATGGGCGAAATGGATCTTGATGACAGAGAAAACTGCTGTCGGGATGAAAAATTGGCTATGGATTTTAAAAATACACAAAGACGAATTGCCCGTTCTGTTTCAACCTCGTGTCTTGCTGGTATGGATATGTTAAAGAAAGAACTATGCAAGTGCATGGCTGAGGACATCCAAGGCTAA 1650 0.3964 MDTDEECSIVLELPESDPFFDKKKKLLQSKGFSPKERIYLRSSSKPGWMSATVQVLVQIARIIQLNELELYFAEEDVCTAKEFYSPRNELEALNSIVLLTDISLSSCTHLHTNILQGLRQTVLDLITDLGDKNSVKGVVEKDHSCDQEERLIEWGESNGVKTQLKIAYTERAGRGAIARKDLNVGDIALEIPVSIIISEELIHETQMYGVLKEIDGISSETILLLWSMKEKYNSDSKFKIYFDTLPEKFNTGLSFSIEAITVLDGTLLLEEIMQARQHLHAQYDELFPALCNTFPDIFPPELYTWEKFLWACELWYSNSMKIMYSDGKIKTCLIPIAGFLNHSLCPHVMHYGQVDSANNSLKFCLSRPCKSGEECCLSYGNFSSSHLITFYGFLPQGDNPYDVIPLDIDGADVDSNEDIPESNWTSHMVRGTWLSRDHKMFYYGLPSPLLDHLRRSRSPMLRPKTFLQENLENELGVLENLKDIFDDMIENMGEMDLDDRENCCRDEKLAMDFKNTQRRIARSVSTSCLAGMDMLKKELCKCMAEDIQG 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05214 549 Pfam Rubisco LSMT substrate-binding 14 104 IPR015353 -
Viun3g05214 549 FunFam Transcription factor, E2F and DP-related 146 394 - -
Viun3g05214 549 FunFam SET domain-containing protein 4 141 - -
Viun3g05214 549 Gene3D set domain protein methyltransferase, domain 1 110 393 - -
Viun3g05214 549 SUPERFAMILY SET domain 148 401 IPR046341 -
Viun3g05214 549 CDD SET_LSMT 164 394 - -
Viun3g05214 549 Gene3D - 2 109 IPR036464 -
Viun3g05214 549 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 146 490 - -
Viun3g05214 549 ProSiteProfiles SET domain profile. 162 380 IPR001214 GO:0005515
Viun3g05214 549 Pfam SET domain 173 380 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05214 Viun-Chr3 58721656 58729673 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun3g05214 SET 3.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05214 K19199 - gmx:100778605 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05214 3 58721656 58729673 Viun3g05214 3 58721656 58729673 ECH