Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05213 ATGGATACTGACGAGGAGTGCTCAATTGTTCTTGAATTACCTGAAAGTGATCCTTTCTTTGACAAAAAGAAGAAATTACTACAAAGTAAGGGTTTTAGTCCCAAAGAACGGATATACCTCAGGAGTTCTTCAAAACCTGGCTGGATGAGTGCTACTGTGCAGGTGTTAGTTCAGATTGCTCGTATCATACAATTAAATGAGCTGGAACTTTATTTTGCTGAAGAGGACGTATGCACAGCAAAGGAATTTTACAGTCCCAGGAATGAGTTGGAGGCTCTCAATTCAATTGTTTTGCTCACTGACATATCACTTTCTAGTTGTACACATCTCCATACAAATATCCTGCAAGGGTTACGCCAAACAGTTCTTGATTTAATTACTGATTTGGGGGACAAAAACAGTGTGAAGGGAGTAGTTGAAAAAGACCATAGTTGTGATCAAGAAGAACGCCTGATAGAATGGGGTGAAAGCAATGGCGTAAAGACACAGTTAAAAATAGCTTGTAAGTTTCAGTGTGCCTTTCTTTCCTTTTGTTCAAATATTACCTTTCCTTTTAACATCTATAATACAAATTTCTTCCCCCCTAAAATCTACACAGATACTGAACGAGCTGGTCGAGGTGCAATAGCAAGGAAAGATCTAAACGTTGGAGATATTGCTTTGGAAATTCCTGTGTCCATTATCATTTCTGAGGAGCTTATTCATGAAACTCAAATGTATGGTGTCTTGAAAGAAATTGACGGCATATCATCTGAGACAATATTGCTATTATGGAGTATGAAAGAAAAGTACAACAGTGATTCAAAATTCAAAATTTATTTTGACACACTCCCAGAAAAATTTAATACAGGTTTGAGTTTCAGCATTGAAGCAATTACAGTGTTAGATGGAACCTTACTGTTGGAAGAGATAATGCAAGCAAGACAGCACCTGCATGCTCAATATGATGAGTTGTTCCCTGCTCTGTGCAATACTTTTCCTGATATATTTCCACCAGAGCTGTACACATGGGAGAAATTTTTATGGGCTTGTGAACTTTGGTACTCTAATAGCATGAAGATAATGTATTCCGATGGAAAGATAAAAACATGCTTGATCCCTATTGCTGGCTTTCTCAATCATTCGCTGTGCCCGCATGTTATGCACTATGGCCAAGTGGATAGTGCAAATAATTCACTGAAATTTTGTCTATCAAGACCATGCAAATCTGGAGAAGAATGCTGCTTAAGCTACGGCAACTTCTCCAGCTCTCATTTAATTACCTTTTATGGTTTTTTACCACAAGGAGACAACCCATATGATGTTATTCCGTTAGACATTGACGGTGCCGACGTTGATTCTAATGAGGATATACCCGAGTCCAACTGGACGAGTCACATGGTGCGTGGTACCTGGCTCTCCAGGGATCACAAGATGTTCTACTATGGTCTTCCCTCTCCATTATTGGACCATCTTCGGAGATCTCGAAGTCCAATGCTGCGACCAAAAACCTTTTTGCAAGAAAACTTGGAAAATGAGCTTGGAGTTCTTGAAAATCTCAAAGATATCTTCGATGACATGATCGAAAATATGGGCGAAATGGATCTTGATGACAGAGAAAACTGCTGTCGGGATGAAAAATTGGCTATGGATTTTAAAAATACACAAAGACGAATTGCCCGTTCTGTTTCAACCTCGTGTCTTGCTGGTATGGATATGTTAAAGAAAGAACTATGCAAGTGCATGGCTGAGGACATCCAAGGCTAA 1746 0.3923 MDTDEECSIVLELPESDPFFDKKKKLLQSKGFSPKERIYLRSSSKPGWMSATVQVLVQIARIIQLNELELYFAEEDVCTAKEFYSPRNELEALNSIVLLTDISLSSCTHLHTNILQGLRQTVLDLITDLGDKNSVKGVVEKDHSCDQEERLIEWGESNGVKTQLKIACKFQCAFLSFCSNITFPFNIYNTNFFPPKIYTDTERAGRGAIARKDLNVGDIALEIPVSIIISEELIHETQMYGVLKEIDGISSETILLLWSMKEKYNSDSKFKIYFDTLPEKFNTGLSFSIEAITVLDGTLLLEEIMQARQHLHAQYDELFPALCNTFPDIFPPELYTWEKFLWACELWYSNSMKIMYSDGKIKTCLIPIAGFLNHSLCPHVMHYGQVDSANNSLKFCLSRPCKSGEECCLSYGNFSSSHLITFYGFLPQGDNPYDVIPLDIDGADVDSNEDIPESNWTSHMVRGTWLSRDHKMFYYGLPSPLLDHLRRSRSPMLRPKTFLQENLENELGVLENLKDIFDDMIENMGEMDLDDRENCCRDEKLAMDFKNTQRRIARSVSTSCLAGMDMLKKELCKCMAEDIQG 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05213 581 Gene3D set domain protein methyltransferase, domain 1 145 426 - -
Viun3g05213 581 Gene3D - 2 112 IPR036464 -
Viun3g05213 581 ProSiteProfiles SET domain profile. 183 412 IPR001214 GO:0005515
Viun3g05213 581 Pfam Rubisco LSMT substrate-binding 14 103 IPR015353 -
Viun3g05213 581 CDD SET_LSMT 199 426 - -
Viun3g05213 581 Pfam SET domain 205 412 IPR001214 GO:0005515
Viun3g05213 581 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 146 523 - -
Viun3g05213 581 FunFam SET domain-containing protein 4 141 - -
Viun3g05213 581 SUPERFAMILY SET domain 197 433 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05213 Viun-Chr3 58721651 58729673 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun3g05213 SET 4.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05213 K19199 - gmx:100778605 984.556