Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05206 ATGGAACAACAACAATCTGCACAACACGAAAACCATGATTTCATTTTCCGTTCCAAACTCCCCGACATTAACATTCCCTCGCACCTACCTCTCCACACTTACATCTTCCAAAACATCTCCCAATTCAGCCACCGGCCCTGCCTCATCAACGCCGCTACTGGAGACTGCTTCACCTATGCCGACGTCCAACTCACCGCTCGCAGAGTCGCCGCCGGCCTCACCAAACTCGGCATCCAGCACGGCGACGTCATCCTCCTTCTCCTCCAGAACTGCCCCCAGTTCGTCTTCGCATTCCTGGGCTCCTCCTTCTGCGGCGCCACCATCACCACCGCTAACCCCTTCTACACTCCGGCGGAGGTGGCCAAGCAAGCCGCGGCGTCGAACACCAAACTCATCATAACGGAGGCGTCGTTCGTGGACAAGGTGAAGGATTTCGCGAGGGAAAACGACGTCAGAGTGATGTGCGTTGACGCGGCGCCGGAAGGTTGCCTTCACTTCTCGGAGTTGACGGAGGCAAACGAGAATGACATTCCCGGCGTTAAAATATCCCCAGACGACGTGGTTGCGCTGCCGTATTCTTCAGGAACGACGGGGCTTCCGAAGGGAGTGATGCTAACGCACAAGGGGATGGTTACGAGCGTGGCGCAACAAGTGGACGGAGAGAACCCTAATTTATATATACGTAGCGAGGACGTGGTGTTGTGCGTGCTTCCACTTTTCCATATTTATGCGCTCTGTACTGTTTTGCTCTGTTCCCTTCGAGTTGGGGCTGCTGTTTTGATAATGCCGAAATTCGATATGGTGAAGTTGCTGGAGCTGGTGGAAAAACACAAAGTGAGTGTGACGCCGTTTGTGCCACCCATTATTTTGGCGATTGCGAAGAGCGAAGATTTGCAGCGATACGACCTATCGTCGATTCGAATGATAATATGTGCTGCAGCACCTGTGGGGGAGGAAGTTTCCAATTCTATGAGGGTGAAAGTTCCGAGCGCCATATTCGGTCAGGGTTACGGGATGACGGAGGTATCATCTATTTCGTTCTCCTTAGGGTTTGCGAAGGAAGCAGTGGATGTGAAAGCAGGTTCTATCGGGAGCGTGGTAAGGAACACGGAGTTGAAGATCGTTGACCTTCAAACAAGTGCTTCGCTCCCTAGGAATAAAGCTGGTGAGATTTGCATCAGAGGCAACCAGATCATGAAAGGTTACCTAAATAACGAAGAGGCGACAAAAAATACAATAGATACGGAGGGATGGTTGCATACGGGTGATATTGGGTACATCGATGATGATGATGAACTTTTCATCGTTGATCGAATGAAGGAATTGATCAAATACAAAGGATTTCAAGTGGCTCCAGCGGAGTTGGAAGCCATTCTAATTGCACACCCCGATATTTCAGATGCTGCTGTTGTATCCATGAAGGATGAAGTTGCAGGAGAAGTTCCAGTAGCATTTGTTGTACGATCAAAAGCTTCTAATATATCTGAGCAAGAAATCAAGCAATACATCTCAAACCAGGTTGTGTTTTATAAAAGAGTCACTAGGGTTTTCTTTGTGGGCTCCATTCCAAAGTCTGCCACCGGAAAGATCTTGCGAAGAGAAATCATGGCAAGGCTTTGA 1620 0.4951 MEQQQSAQHENHDFIFRSKLPDINIPSHLPLHTYIFQNISQFSHRPCLINAATGDCFTYADVQLTARRVAAGLTKLGIQHGDVILLLLQNCPQFVFAFLGSSFCGATITTANPFYTPAEVAKQAAASNTKLIITEASFVDKVKDFARENDVRVMCVDAAPEGCLHFSELTEANENDIPGVKISPDDVVALPYSSGTTGLPKGVMLTHKGMVTSVAQQVDGENPNLYIRSEDVVLCVLPLFHIYALCTVLLCSLRVGAAVLIMPKFDMVKLLELVEKHKVSVTPFVPPIILAIAKSEDLQRYDLSSIRMIICAAAPVGEEVSNSMRVKVPSAIFGQGYGMTEVSSISFSLGFAKEAVDVKAGSIGSVVRNTELKIVDLQTSASLPRNKAGEICIRGNQIMKGYLNNEEATKNTIDTEGWLHTGDIGYIDDDDELFIVDRMKELIKYKGFQVAPAELEAILIAHPDISDAAVVSMKDEVAGEVPVAFVVRSKASNISEQEIKQYISNQVVFYKRVTRVFFVGSIPKSATGKILRREIMARL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05206 539 CDD 4CL 25 534 - -
Viun3g05206 539 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Viun3g05206 539 SUPERFAMILY Acetyl-CoA synthetase-like 12 538 - -
Viun3g05206 539 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 535 - -
Viun3g05206 539 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 440 - -
Viun3g05206 539 FunFam 4-coumarate--CoA ligase 2 441 539 - -
Viun3g05206 539 Gene3D - 440 539 IPR045851 -
Viun3g05206 539 Gene3D - 6 439 IPR042099 -
Viun3g05206 539 Pfam AMP-binding enzyme 38 445 IPR000873 -
Viun3g05206 539 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05206 Viun-Chr3 58619379 58624742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05206 1 507 Monolignol Biosynthesis Gene Families AT1G51680 64.922 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05206 K01904 - gmx:100780741 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05206 3 58619379 58624742 Viun3g05206 3 58619379 58624742 ECH