Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05205 ATGCCACCAACACCAATGGCACCTTCTCCACAAGAATTCATCTTCAGATCTCCGCTTCCCGATATTCCCATTCCCACGCACCTTCCTCTACACTCTTACTGCTTCGAAAACCTCTCTCAATTCCAACACCGAACATGCCTCATCGACGGCGACACAGGCGACACACTCACCTACGCCGAAGTCAACCTCGCCGCCCGCCGCATCGCCGCCGGCCTCCACAACATCGGCATCCGCCAGGGTGACGTCATCATGCTCGTCCTCCGCAACTGCCCCCAATTCGCCCTCGCTTTCCTCGGCGCCTCCCACCGCGGCGCCGTCATCACCACCGCCAACCCCTTCTACACTCCGCTCGAGCTGGCCAAGCAAGCCACCGCCACCAAAACCAGGCTCGTTATAACACAATCCGCGTACGTGGACAAAATCAAGAGCTTCGCCGACAACACTGACGTCATGGTCATGTGCATCGATACATGCCCCCCTGGGGACGATGGCGTTTTGCATTTCTCCACGCTAACTGACGCCGACGAAACGGAAGCCCCCGCCGTTAAGATTAGCCCAGACGACGTCGTCGCGCTTCCGTTTTCTTCCGGCACTTCGGGGCTCCCCAAGGGCGTTATGTTGTCGCATAAAAACTTGGTCACCACCATCGCCCAGTTAGTTGACGGCGAAAACGCGCACCAGTACACTCACAGCGAGGATGTGCTCCTCTGCGTGCTGCCTATGTTTCATATTTATGCGCTCAATTCAATTTTACTCACCGGGATTCGATCCGGTGCGGCCGTTCTCATTGTGCAGAAGTTTGAGATGACGACTCTGTTGGAGCTGATCCAGAAGTACAGGGTAACCGTTGCGTCGTTTGTGCCACCCATCGTTTTGGCGTTGGTTAAGAGCGGAGAGGCCCACCGATACGACCTCTCCTCCGTTCGCGCCGTCGTCACCGGCGCCGCACCTTTGGGAAAGGAACTGCAAGAAGCCATGGAATCTAGGCTACCACACGCTACTTTCGGACAGGGGTATGGGATGACAGAAGCAGGACCACTTGCGATTAGCATGGCATTTGCAAAAGAACCCTCAAAGGTAAAACCTGGTGCATGCGGAACCGTTGTGAGAAACGCTGAGATGAAAATCGTGGACACAGAAACTGGTGTTTCCCTTCCAAGGAACAAAACCGGTGAAATTTGCATAAGAGGCACAAAGGTTATGAAAGGATATCTGAACGACCCAGAGGCTACAGAGAGAACCATAGACAAAGATGGATGGCTCCACACAGGTGATATTGGTTACATCGACGATGATGACGAACTCTTCATTGTTGATAGGTTAAAGGAATTGATCAAATACAAAGGCTTCCAAGTAGCTCCTGCTGAGCTCGAAGCATTGTTAATTTCTCATCCAGACATCTCTGAAGCTGCCGTTGTGCCCATGAAAGATGAAGCTGCCGGAGAAATTCCTGTTGCATTTGTCGTAAGATCAAAAGGTTCTGAGATCACTGAAGATGAGATCAAGAAATACATTTCACAACAGGTGGTGTTTTACAAGAGAATTGGTAGGGTTTTCTTCACAGACTCTATTCCTAAAGCAGCCTCAGGCAAAATTCTGAGGAAGGTATTAACTGCAAGAGTGAACGAAGGTCTGGTGGTGGCAAATTAG 1650 0.5176 MPPTPMAPSPQEFIFRSPLPDIPIPTHLPLHSYCFENLSQFQHRTCLIDGDTGDTLTYAEVNLAARRIAAGLHNIGIRQGDVIMLVLRNCPQFALAFLGASHRGAVITTANPFYTPLELAKQATATKTRLVITQSAYVDKIKSFADNTDVMVMCIDTCPPGDDGVLHFSTLTDADETEAPAVKISPDDVVALPFSSGTSGLPKGVMLSHKNLVTTIAQLVDGENAHQYTHSEDVLLCVLPMFHIYALNSILLTGIRSGAAVLIVQKFEMTTLLELIQKYRVTVASFVPPIVLALVKSGEAHRYDLSSVRAVVTGAAPLGKELQEAMESRLPHATFGQGYGMTEAGPLAISMAFAKEPSKVKPGACGTVVRNAEMKIVDTETGVSLPRNKTGEICIRGTKVMKGYLNDPEATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPDISEAAVVPMKDEAAGEIPVAFVVRSKGSEITEDEIKKYISQQVVFYKRIGRVFFTDSIPKAASGKILRKVLTARVNEGLVVAN 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05205 549 CDD 4CL 24 537 - -
Viun3g05205 549 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
Viun3g05205 549 Pfam AMP-binding enzyme 36 447 IPR000873 -
Viun3g05205 549 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Viun3g05205 549 Gene3D - 9 441 IPR042099 -
Viun3g05205 549 Gene3D - 442 546 IPR045851 -
Viun3g05205 549 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 538 - -
Viun3g05205 549 SUPERFAMILY Acetyl-CoA synthetase-like 16 543 - -
Viun3g05205 549 FunFam 4-coumarate--CoA ligase 2 443 544 - -
Viun3g05205 549 FunFam Long-chain-fatty-acid--CoA ligase FadD 16 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05205 Viun-Chr3 58605890 58610849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05205 12 509 Monolignol Biosynthesis Gene Families AT1G51680 65.347 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05205 K01904 - gmx:548034 962.214