Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05182 ATGTGTAATAAAGGGGTTCAATGCTTGAACGAGTGTGAGAGTGAAATTGATCAAGGGCAAGAATTCTTCGTCATGGATAGTCCAATTCGATCGCCAGCTGCCGGTTCAGGCTTCGGCGAAGATAACCGGCGTGTTAAGTTCTTGTGCAGCTTTCTGGGGAGCATAATGCCCCGTCCCCAAGATGGGAAGCTGCGTTACGTAGGTGGCGAGACACGAATTGTGAGTGTTTGTAGAGATATTAGCTACGAGGAGTTGATGGTGAAGATGAGAGAGTTGTATGATGGGGCTGCTGTGTTGAAGTACCAGCAGCCTGACGAGGACCTTGATGCTCTGGTTTCTGTTGTCAATGACGATGATGTGGTTAACATGATGGAAGAGTATGACAAGTTGGGTTCAGGGGATGGATTCACTAGGCTCAGGATATTTTTGTTTTCACAGTCCGAGCAGGATGGTTCCTCACATTTCATTGATGGGGATGATTCTGAGAGGAGGTATGTTGATGCATTGAATAGTTTAAACGATGTTGCTGACTTTAGGAGGTTGCAACAAGGAGAGTATCCAATGATGAGCCCTGTTGAGGATATCCATGTGGCTGCTGAACAGTTTTTTAATCCAATGAGTGTGGAAAGTGGGATTCATTCTCACAGAAGTGGGGACCTATCTATGCCACCGTATAATATGCATCATCTCTCGATCCAGCACCCGCAAAATGTGGGCCCAAGGTATACTGAAATGGATTCTCCTTGGAATCCTGCTTATTACTCTCCTAGGCACCATGGTCTCCACGACTCCAGATCATTAGTTGAATTTCCATCTTCGCCGTCTGGTAGGTACCGAATGCCATTTCCAGAGTTACCGGAGAAGTGCATTGATCGAGGGCCGGAAGAGTATGCTCGACATCATGTAAACCACCATCCTATGTATGATAATCAACAGCAGTATGCTGATAATGTTTTTTGGGGGCCGACTGGAGCAGCACATTCTGAAAAGACAAGTTTTCCAGGCAATGTTGTTCATGGTTCCCATGTTGTTGATGGGAACAACATATGTGAGCAGTGTCGCATGGGTTTTCACAGAGGTCATCCACATCTGGAGCATTCTAATATAAGTAATGGATTTCTACCGGTTGCTAATCATTGTGGAGAATGCCCCCTGCCAAATAGGGATGCTTTCCCCATGAATGTTGATGCAAAGTTACATCCCGCAATGTATCCCAATGAACCTAATAGTGATCACAGGTCTGTTTATAATGATACTCAAAATCATGAGAGAGGTTGGGGTTTTCAGCATCCAACAACTGCTCGGGTTGAAGAATCAAGAGGACATTTATCTGTATCTGGAAGAGTGAGTGATGTTCCAGTTGCAAATTTCTCTCTTGGGCATGGTAGTGTGACCGATGGACATGCCCTGTCGTCCAATTATCTTCATCAACCGGTTGGACCTGAATTGGGTACTGAAATTTTCCCTGACCAAACCATGACTGCATTACCACACGTACAACTAGAAGAATGCAATGTGCGGTATGGAAACCCACCTTCTCCTTATGGAGTAGACAGTAATTATGCTGTGCCCCGTGGACATCCACCTGGTTTATGGAGGAATACACCAATTCCTGTTCATATGGGACCACCTTATGAGGCAAATACCTCACCCCCGCCGGTGAATGGTATGATAAATGCGGCATTAGTCAGGGGAGAAGGCAGTCCAGGGTTTTACGTTGGAGCAGATACTCAAAATCAATGGGTTGATTCCTCACAGAAATTGACAGGACATGATTGTAAAGGCATCCCAGAATATTCGCCTGCACATGCTCTGAAGTTGAATCCAACACTCCTTGGTCCAGAGAATCAGCCCCCAGTTACTGTAGATACCATTCACCCTCCACAGGACGTGAGTACTGGTGCCTGCTTGGAACCTTTGCAGGTTCCAAAATCATCTTTTAATATGATTCATAATCAGGAAACTTTAAGAAATGACACCCATTTGGCTAAAGCAAAGGCCTTTGAATCAATTACTGCAAAGACTTTTGAATCAATTACTTTGCTTGGAGACGGAATAGTGGTAAAAATTGAGGACAAGGTTAAAAGCCCTGACACGCAGACTGTATCTTGTTCAGAGCAAAATAAAGTTGCTGAGAATGCATGTCCAGCTACTGCTTCTGTTGATTCTAATAATTCAAAGTCTAAACCTGAAGGAGACTGCGGGCATGTTGAGAAACTGGCTGATGAGGACCATTCTGTTCCACAAGATTATAAGCATTTAGGTAATCAATTAAACTTGTTGCCTGAGTTGATTGCTTCAGTGAAAAAGGCTGCATTAGAAGTTGCTGAAGAGGTGAAAGCTGCAGCTAAGGATGATCCAGCCAATTCTCATAATCAAAATTTAGATGCCAAGGAGAAAACAATAAATGAAGTAGAGCCAGCGAATGCTCATGGTGATTTAGAATTGAACTCTGAAACTGACCATGTAGATACTTCTAAAATTGAGCCTACGAAGGCTGAGGAAGAAGCAATTGCCAGGGGATTGCAGACTATTAAAAATGATGATTTGGAGGAGATCCGCGAGCTTGGTTCTGGAACCTATGGAGCTGTTTATCATGGGAAATGGAAAGGCTCTGACGTTGCCATTAAGAGAATAAAAGCCAGTTGTTTTGCTGGAAGGCCATCTGAAAGAGCAAGATTGATTACAGATTTCTGGAAGGAGGCATTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCTGACAGTTCTTTAGCAACAGTCACAGAATTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGAACAATTGATCGTCGTAAGAGACTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAAAACATTGTGCATTTTGATTTGAAATGTGAGAATCTATTGGTCAATATGAGAGATCCTCAACGCCCTGTCTGCAAGATTGGTGATTTGGGTTTATCAAAGGTTAAACAGAACACTCTAGTGTCTGGTGGAGTACGTGGGACTTTGCCATGGATGGCACCGGAGCTTCTTAGTGGGAAAAGCAATATGGTGTCGGAGAAGATTGATGTGTACTCATTCGGAGTAGTTATGTGGGAGTTGCTTACAGGGGATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAGGTGGTATCGTGAACAACAGTTTACGTCCTCAAATCCCATCATGGTGTGATCCTGAGTGGAAGTCTCTAATGGAAAGTTGTTGGGCTTCTGATCCTGCAGAAAGACCATCATTTTCAGAAATTTCAAAGAAGCTAAGGACTATGGCTGCTTCAATGAATGTGAAATAG 3372 0.4342 MCNKGVQCLNECESEIDQGQEFFVMDSPIRSPAAGSGFGEDNRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVCRDISYEELMVKMRELYDGAAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSSHFIDGDDSERRYVDALNSLNDVADFRRLQQGEYPMMSPVEDIHVAAEQFFNPMSVESGIHSHRSGDLSMPPYNMHHLSIQHPQNVGPRYTEMDSPWNPAYYSPRHHGLHDSRSLVEFPSSPSGRYRMPFPELPEKCIDRGPEEYARHHVNHHPMYDNQQQYADNVFWGPTGAAHSEKTSFPGNVVHGSHVVDGNNICEQCRMGFHRGHPHLEHSNISNGFLPVANHCGECPLPNRDAFPMNVDAKLHPAMYPNEPNSDHRSVYNDTQNHERGWGFQHPTTARVEESRGHLSVSGRVSDVPVANFSLGHGSVTDGHALSSNYLHQPVGPELGTEIFPDQTMTALPHVQLEECNVRYGNPPSPYGVDSNYAVPRGHPPGLWRNTPIPVHMGPPYEANTSPPPVNGMINAALVRGEGSPGFYVGADTQNQWVDSSQKLTGHDCKGIPEYSPAHALKLNPTLLGPENQPPVTVDTIHPPQDVSTGACLEPLQVPKSSFNMIHNQETLRNDTHLAKAKAFESITAKTFESITLLGDGIVVKIEDKVKSPDTQTVSCSEQNKVAENACPATASVDSNNSKSKPEGDCGHVEKLADEDHSVPQDYKHLGNQLNLLPELIASVKKAALEVAEEVKAAAKDDPANSHNQNLDAKEKTINEVEPANAHGDLELNSETDHVDTSKIEPTKAEEEAIARGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLITDFWKEALMLSSLHHPNVVSFYGIVRDGPDSSLATVTEFMINGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQNTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGVVMWELLTGDEPYADMHCASIIGGIVNNSLRPQIPSWCDPEWKSLMESCWASDPAERPSFSEISKKLRTMAASMNVK 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05182 1123 Gene3D - 63 147 - -
Viun3g05182 1123 PRINTS Tyrosine kinase catalytic domain signature 1084 1106 IPR001245 GO:0004672|GO:0006468
Viun3g05182 1123 PRINTS Tyrosine kinase catalytic domain signature 932 945 IPR001245 GO:0004672|GO:0006468
Viun3g05182 1123 PRINTS Tyrosine kinase catalytic domain signature 1040 1062 IPR001245 GO:0004672|GO:0006468
Viun3g05182 1123 PRINTS Tyrosine kinase catalytic domain signature 969 987 IPR001245 GO:0004672|GO:0006468
Viun3g05182 1123 Pfam PB1 domain 60 145 IPR000270 GO:0005515
Viun3g05182 1123 SMART PB1_new 59 144 IPR000270 GO:0005515
Viun3g05182 1123 ProSitePatterns Protein kinases ATP-binding region signature. 856 877 IPR017441 GO:0005524
Viun3g05182 1123 MobiDBLite consensus disorder prediction 809 833 - -
Viun3g05182 1123 SUPERFAMILY Protein kinase-like (PK-like) 842 1111 IPR011009 -
Viun3g05182 1123 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 843 937 - -
Viun3g05182 1123 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 938 1123 - -
Viun3g05182 1123 SUPERFAMILY CAD & PB1 domains 61 151 - -
Viun3g05182 1123 Pfam Protein tyrosine and serine/threonine kinase 851 1113 IPR001245 GO:0004672|GO:0006468
Viun3g05182 1123 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 64 146 - -
Viun3g05182 1123 PANTHER SERINE-THREONINE PROTEIN KINASE 102 1115 - -
Viun3g05182 1123 SMART serkin_6 850 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05182 1123 ProSitePatterns Serine/Threonine protein kinases active-site signature. 975 987 IPR008271 GO:0004672|GO:0006468
Viun3g05182 1123 CDD PB1_UP2 48 144 - -
Viun3g05182 1123 Gene3D Phosphorylase Kinase; domain 1 836 935 - -
Viun3g05182 1123 MobiDBLite consensus disorder prediction 815 833 - -
Viun3g05182 1123 CDD STKc_MAP3K-like 856 1113 - -
Viun3g05182 1123 ProSiteProfiles Protein kinase domain profile. 850 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05182 1123 Gene3D Transferase(Phosphotransferase) domain 1 936 1123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05182 Viun-Chr3 58508828 58515617 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05182 44 1123 MAP Kinase Kinase Kinase AT5G57610 54.537 0.0 1048
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Viun3g05182 PK_Tyr_Ser-Thr 3.8e-62 CL0016