LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g05177	ATGGCGGAAGATATTTTTCAAACAATATCATTTTCCAATAAATTGGACTCAAGTCAGCAAAATGATATAGCAGGCATTCAGGGAGAAAAAAATTCAAAAGAACCAGTGTCCTTGGCAAGGGGAGCAATGGGGTTTGAAAAAAAAATTGGGAAGTATCAGCTTGTTAGGACCATTGGAGAAGGTAGCTTCTCTAAGGTTAAGCTAGCTGTCAATGGCAACAATGGTCAGAAGGTTGCGATCAAGGTCATTGATAAGCATATGATCTTAGAAAACAATCTTAAGACTCAGGTTAAAAGAGAGATCAGAACAATGAAACTTCTGCATCATCCCAATATAGTTAGCATTCACGAGGTTATTGGCACGAAAACGAAGATATACATCGTGATGGAATATGTTACAGGAGGACAACTACTAGACAAGTTGTCCTATGGAGAGAAGTTGGATGAACGTGAGGCAAGAAAACTGTTCCAGCAACTCATTGATGCCTTGGAGTACTGCCATAACAAAGGGGTTTATCATCGAGATCTCAAGCCAGAAAATTTGCTTCTTGACAGCAAGGGAAATCTCAAAGTGTCTGATTTTGGATTAAGTGCATTACAAAAGTGTAATGATGTCTTGACCACGCGGTGTGGATCCCCATGTTATGTAGCACCTGAGCTTCTACTGAGCAAGGGGTATAATGGAGCAGCTGCTGATGTCTGGTCGTGTGGGGTGATCCTTTTTGAATTACTTGCAGGCTATTTACCATTTAATGACCAGAACTTGATGAACTTATATGGAAAGATATGGAAGTCAGAATATAAATGTCCCACATGGTTTACTCGGAGTCAAAAGAAACTAATTGCCAAAATACTTGAACCACGTGCTGCAAAGCGGATAACTATATCAGATATTATTGAAGATCCGTGGTTTCAAAAAGATTACAAGCCTGTTTGTGCATCTGAATTTGATCAGAACATTAACTTGGAGGATGTTGATGTGGCTTTCAATTCAATTCAGGAAAATGTCAGAGAGACGACGGTATCTAAGTCCTCAAGTTTCATTAATGCGTTTCAACTAATAGCTATGTCTCAGGATCTTGATCTATCGGGTCTTTTTGTAGAACAGGAGGAAAAAAAGCAGACAAAAAGGATGGGATCCAAACACACTATCAATGAAACGATGGAAAAAATAGAAGCTGCTGCAACCGATGCAAGACTGTCGGTAGAGAAAATTAGCAACTTTAAGATAAAATTGCAACCGAAACAGACAATGGCCACGACCAGGTGTTCCAGATCATACTTATCAGCTCAGGTGATTGAAGTTGCTCCAACTCACTGTGTTGTAGAAATATCAAAATCTACTGGAGATATAAGAACGTACAACAAATTTTGTGAAAGTTTATCAAATCTGGTGAAGCAAAAACCCGGTGTGCCATCACAGAGCGAAGATTCTGTAGATCAATGTGCCTCTGAGAGAAAAAAACACGACGCTGGATGCTATGAAGAGCCAAAAAGTGAAGATAGAAAACTTTTTCGTGGCTACGAATCTTCTTGA	1536	0.3939	MAEDIFQTISFSNKLDSSQQNDIAGIQGEKNSKEPVSLARGAMGFEKKIGKYQLVRTIGEGSFSKVKLAVNGNNGQKVAIKVIDKHMILENNLKTQVKREIRTMKLLHHPNIVSIHEVIGTKTKIYIVMEYVTGGQLLDKLSYGEKLDEREARKLFQQLIDALEYCHNKGVYHRDLKPENLLLDSKGNLKVSDFGLSALQKCNDVLTTRCGSPCYVAPELLLSKGYNGAAADVWSCGVILFELLAGYLPFNDQNLMNLYGKIWKSEYKCPTWFTRSQKKLIAKILEPRAAKRITISDIIEDPWFQKDYKPVCASEFDQNINLEDVDVAFNSIQENVRETTVSKSSSFINAFQLIAMSQDLDLSGLFVEQEEKKQTKRMGSKHTINETMEKIEAAATDARLSVEKISNFKIKLQPKQTMATTRCSRSYLSAQVIEVAPTHCVVEISKSTGDIRTYNKFCESLSNLVKQKPGVPSQSEDSVDQCASERKKHDAGCYEEPKSEDRKLFRGYESS	511

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g05177	511	FunFam	Non-specific serine/threonine protein kinase	43	131	-	-
	Viun3g05177	511	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	171	183	IPR008271	GO:0004672\|GO:0006468
	Viun3g05177	511	Pfam	Protein kinase domain	52	304	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g05177	511	ProSiteProfiles	NAF domain profile.	343	367	IPR018451	GO:0007165
	Viun3g05177	511	Pfam	NAF domain	346	404	IPR004041	GO:0007165
	Viun3g05177	511	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	49	460	-	-
	Viun3g05177	511	MobiDBLite	consensus disorder prediction	467	498	-	-
	Viun3g05177	511	Gene3D	Kinase associated domain 1, KA1	343	467	-	-
	Viun3g05177	511	ProSitePatterns	Protein kinases ATP-binding region signature.	58	81	IPR017441	GO:0005524
	Viun3g05177	511	MobiDBLite	consensus disorder prediction	480	498	-	-
	Viun3g05177	511	Gene3D	Transferase(Phosphotransferase) domain 1	132	332	-	-
	Viun3g05177	511	ProSiteProfiles	Protein kinase domain profile.	52	304	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun3g05177	511	Gene3D	Phosphorylase Kinase; domain 1	42	131	-	-
	Viun3g05177	511	FunFam	Non-specific serine/threonine protein kinase	343	468	-	-
	Viun3g05177	511	CDD	CIPK_C	349	462	-	-
	Viun3g05177	511	FunFam	Non-specific serine/threonine protein kinase	45	345	-	-
	Viun3g05177	511	SUPERFAMILY	Protein kinase-like (PK-like)	49	321	IPR011009	-
	Viun3g05177	511	SMART	serkin_6	52	304	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g05177	Viun-Chr3	58470719	58475770	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g05177	26	461	CBL-interacting serine-threonine protein kinases	AT1G01140	46.939	3.51e-139	407

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Viun3g05177		Pkinase	1.2e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g05177	-		-	vun:114177464	1017.68