Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05173 ATGGGAATTGAAAGAGGAGGCTTGAAGGGGTTCAGGAGCGGCTGGACCGTGCCGCCAAAGCCATGTGACTCCTGCAAACTGGCTTCGGCGGCGCTTTTCTGCCGCCCCGATTCCGCTTTTCTCTGCATCGCTTGCGACTCCAAGATTCACTGCGCCAACAAGCTGGCGTCGCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGCGAGCAGGCCCCCGCGGCTGTCACGTGCAAGGCTGACGCCGCCGCTCTCTGTATCACGTGCGACTCAGACATCCACTCTGCCAACCCCCTCGCGCGCCGCCACGACCGCGTCCCCGTTGAGCCTTTCTTCGACTCCGCCGACTCCATCGTCAAGGCCTCCGCCGCTGCCTCCTTCGGCTTCATCGTCCCCTCCGACGACGCCACCGCTGCCTCCGATGCCTTCGCCCCCGACGACACTGACGCAGCCGCCTGGCTCATCCCTAACCCCAATTTCGGGTCGAAACTCATGGACGCCCCTGACATCAAGTCCAAGGAGATCTTCTACTCAGAAATGGACCCCTTCCTCGACTTCGATTACTCAAACTCCTTCCACAACAGCGCCGGAAACGACAGCGTCGTTCCGGTTCAAACCAAACCTTCCCTCGCTCCTTCCCTCATCAATAACCACCACCAATCAGAAAGCTGCTTCGACATCGATTTTTGCCGCACCAAGCTCTCCTCCTTTAACTACCCATCCCAGTCTCTCAGCCAAAGCGTTTCGTCGTCATCGCTTGATGTTGGAGTGGTGCCGGACGGGAACACCGTGTCGGAGATGTCGTACTCGTTCGGGCGGAACAGTTCGGAATCGAGTGGGATTGGTTTGTCCGGAGTAAGTGGAGGGCAAGGGGCGACGCAGTTGTGTGGGATGGACCGTGAAGCGAGGGTGCTGCGATACAGAGAGAAGAGGAAGAACCGAAAGTTCGAGAAAACCATTCGATACGCTTCGCGGAAGGCTTATGCGGAAACCCGGCCCAGGATAAAAGGGCGGTTCGCGAAGCGAGCCGAAATTGACTCGGATGTGGAGCGTCTGTACAGCCCTGGCGCTGCGTCGCTGATGCTGGACAGTCCATACGGCGTCGTACCGTCGTTTTAG 1116 0.5923 MGIERGGLKGFRSGWTVPPKPCDSCKLASAALFCRPDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPAAVTCKADAAALCITCDSDIHSANPLARRHDRVPVEPFFDSADSIVKASAAASFGFIVPSDDATAASDAFAPDDTDAAAWLIPNPNFGSKLMDAPDIKSKEIFYSEMDPFLDFDYSNSFHNSAGNDSVVPVQTKPSLAPSLINNHHQSESCFDIDFCRTKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSEMSYSFGRNSSESSGIGLSGVSGGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRAEIDSDVERLYSPGAASLMLDSPYGVVPSF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05173 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 356 IPR045281 GO:0009909
Viun3g05173 371 CDD Bbox1_BBX-like 65 107 - -
Viun3g05173 371 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Viun3g05173 371 Pfam B-box zinc finger 19 61 IPR000315 GO:0008270
Viun3g05173 371 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Viun3g05173 371 CDD Bbox1_BBX-like 21 64 - -
Viun3g05173 371 SMART bboxneu5 65 107 IPR000315 GO:0008270
Viun3g05173 371 SMART bboxneu5 17 64 IPR000315 GO:0008270
Viun3g05173 371 Pfam CCT motif 299 341 IPR010402 GO:0005515
Viun3g05173 371 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Viun3g05173 371 ProSiteProfiles CCT domain profile. 299 341 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05173 Viun-Chr3 58369011 58370760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05173 1 371 C2C2-CO-like Transcription Factor Family AT5G57660 54.593 4.09e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Viun3g05173 zf-B_box 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05173 - - gmx:100805693 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05173 3 58369011 58370760 Viun3g05173 3 58369011 58370760 ECH