Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05172 ATGGTACTTCCCTCCCCTGCCAAAATACTCATTGGCCTCTCCTTAAACCCGGAGGACAGCAAGGACCTTCTCTCATGGGCAATAACAGTTCTGGCCAATCCAAATGACACCATTGTGGCTGTTCATGTGCTTGTTACTGTTGACAAGAAGAAGCGAGTCTCCGTCAGAAAAAGACAATCACAACTTAGACAAGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAGACCTGTTGGTCTAAGCAGGTTAATTTGGAGGCAAGGGTGGCACTCAATTCCACAGTTGGTGAAGGTTTAGTGGAGGAAACCAAGTCCATCAACGCTGACTTTCTTCTTATTCGTGGCTCAAGAAACCAAACTAATAAAAATGGAACTTCTAAAGGAATTACCAGGTATTGCTTTGAGCATGCACATGAAGGGTGCACAATGGTCTCAGTCCGAAGACGTGATAAGACAGATCAAAGTGTCAAACCAAATTCAGCTCCTTTTCAAGATAACAGACAACAAAATTCAAGATGGTTTAAGAAGGGAAAACAATGTGAAAAGGGTGTCTCCCCTGTTCTGGAGGATTATATCTCAGGAATCAAGGCTCAGAACCGTTCACCAAGAACAGTACTGAATGGTCTAGAGGGACAATCAAACAGCACAGAAGATGATACCTTTAGCACTAGGGTCTCAAGCACCACTTATACCCCATCGATGGATTCTAAGATCAAGAGCCGATCCAAGATAAAACCACAGTTCTCCTTTAGGTTCATAGTCTCATTCCTTGCTTCACCATTTAGAAGGAAAAACTTGAACATTTACAGAAGTGAAAAGCGTCAGCCTTTGTTAAAGTGCTTCAGCTACGAACAGATATCCAATGCTACCAACGACTTCCACCAAGATAATTTGGTTGGACGAGGTGGTTATTCGGAAGTATACAAAGGTGATCTTTCAGATGGACGAACCATTGCTGTGAAGAGGTTGGCCAAGGACAACAAGGATCCTAACAAGGAAAAAGAGTTCCTTATGGAATTGGGTGTTATTGGACATGTCTGTCATCCAAATACTGCAACTTTAGTGGGCTGCTGCATTGAAAATGGGCTATATCTGATTTTCAATTACTCTCAAAATGGAAATCTGGCAACTTCATTGCATGGCAAAGGAGGAGATTCACTTGACTGGCCAATCAGGTACAAAATTGCCATTGGTGTTGCAAGGGGTCTCCATTATCTTCATAAATGTTGCAAACACCGAATAATTCACCGTGACATTAAAGCCTCTAATGTTCTTCTTGGTCCTGACTATGAACCACAGATTGCTGATTTCGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTGATCCCCGTAGAGGGCACATTTGGATACCTAGCGCCAGAGTACTTTATGCACGGAATCGTGGATGAGAAAACAGATGTTTTCGCATTTGGAATTCTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCGTCAAAACAAAACCTTCTCTTATGGGCAAAGCCTTTAATGGAATCAGGGAACATTACCGAGCTTGCTGATCCAAGAATGGAAGGTAAATATGATGGAGAGCAACTGTACAGGGTAGTGCTGGCGGCTTCATACTGTGTGAGACAAACTGCCACGTGGCGTCCTCCAATGAGCGAGGTGTTGGAGCTGCTAACCAGTGGAGAAGACAGTGAGGTTGGAAAAAGCTGGAGGATCCCAAAGTTCACCTCTGATGAATTGGACGATTACTCTATGGTTTTCGGCTACGATGTACCCTCAGACCTATCTTTGGAGGATTTTTTGTGA 1818 0.434 MVLPSPAKILIGLSLNPEDSKDLLSWAITVLANPNDTIVAVHVLVTVDKKKRVSVRKRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEARVALNSTVGEGLVEETKSINADFLLIRGSRNQTNKNGTSKGITRYCFEHAHEGCTMVSVRRRDKTDQSVKPNSAPFQDNRQQNSRWFKKGKQCEKGVSPVLEDYISGIKAQNRSPRTVLNGLEGQSNSTEDDTFSTRVSSTTYTPSMDSKIKSRSKIKPQFSFRFIVSFLASPFRRKNLNIYRSEKRQPLLKCFSYEQISNATNDFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLIFNYSQNGNLATSLHGKGGDSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQIADFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSSKQNLLLWAKPLMESGNITELADPRMEGKYDGEQLYRVVLAASYCVRQTATWRPPMSEVLELLTSGEDSEVGKSWRIPKFTSDELDDYSMVFGYDVPSDLSLEDFL 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05172 605 Gene3D Phosphorylase Kinase; domain 1 259 371 - -
Viun3g05172 605 CDD USP_Like 8 140 - -
Viun3g05172 605 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 149 - -
Viun3g05172 605 MobiDBLite consensus disorder prediction 207 236 - -
Viun3g05172 605 ProSiteProfiles Protein kinase domain profile. 295 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05172 605 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 372 576 - -
Viun3g05172 605 Pfam Protein kinase domain 295 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05172 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Viun3g05172 605 FunFam Putative receptor-like serine/threonine-protein kinase 262 371 - -
Viun3g05172 605 Gene3D HUPs 4 149 IPR014729 -
Viun3g05172 605 SMART serkin_6 295 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05172 605 SUPERFAMILY Protein kinase-like (PK-like) 270 562 IPR011009 -
Viun3g05172 605 Pfam Universal stress protein family 8 141 IPR006016 -
Viun3g05172 605 Gene3D Transferase(Phosphotransferase) domain 1 373 575 - -
Viun3g05172 605 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Viun3g05172 605 PANTHER OS08G0249100 PROTEIN 59 575 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05172 Viun-Chr3 58353714 58356954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05172 283 601 Trihelix Transcription Factor Family AT1G70460 40.653 5.05e-75 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Viun3g05172 PK_Tyr_Ser-Thr 4.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05172 - - gmx:100782832 1093.18