Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05167 ATGTGTAAGTGCTTCTCCACCCTTTTCTCTCTGTTTTTGATTTTTTTGTTTGTGCTTCAACGAGCACCAACGGGGAATGCGTCAAATGCAACATCAAAGTATGAAGAGATCAAGTTGAGAGTAGGGGTGCCCAGGAAAAATGGTTTCCAACAATTTGTGCATGTAGTTGGGGACGCTTCTCAAAAAAATTACAACATATCAGGATATTGCATCGAGGTTTTCAATGCCGTCATAACCCATTTACCTTTCAATGTTTCTCTACATGTTCAACCTCACATTATTGACTCAAGTGAGGGTTCTGGATACGATGCTCTCCTAAAACTAATCCCGTCAAAGTATGATGTCGTGGTCGGGGATATGACAATCCTAGCCAACCGTTCAAGCTACGTAGATTTCACAGTGCCATATATAGGATCGGGAGTTAAAATGGTAGTACCGGTTCAACACGGGAGGGATCAAAACATGTGGACTTTTGTGAAACCCTTCAGTTGGGATCTGTGGTTGAGCATAATCATCATCTCTACCTTCATAGGGATTGCCATACTCATCATGGAAAGAAACGTAAACGCGTTGCCTAATGAAGAGGGTTCTACAAATCAAAAGCTTTGCCCTGCAACCATCTTATGGTTTCCATTCTCACAAGCCATTCTTCCTGAAAGACAAGTAGTGGTAAAAAGCTGCTCAAGATTTGTGCTGATGGTTTGGCTTCTATTGGCGTTCGTCCTCATGCAAAGTTACACTGCGAACTTGACTTCTATATTGACCTTGGATCGACTGCAACCAAGCTTTCTCAACGTGAATGACTTAAGAAAAGGGGGTTATTACGTTGGATACCAAACGGGGTCTTTCGTTCACGACGTGTTGATTAAGCAATTTAAGTTTGAGCCTTCTAAACTAAGGCCATACAGCAGCAGTTCTGAGTATCACGATGCTCTAAAGCTTGGAAGCAAAAATGGGGGTGTTGCAGCTATATTCGATGAAGTTCCCTACCTTAAACTCTACCTTCAAGAATACGGATCCAATTACATTATGTCTGGCCCCAAATATAGAAATGCTGGCTTTGGTTTTGCACTCCCTTTAAACTCGAATCTCACCGCGTACTTTTCGAGAGCCATCTTGGATGTGACTGAAAGTGATTTGATGAATGAAATTGAAGAGAAATATTTTGGGAAGAATGAAATTGGTGAACAAAACTCGTCTGAGGAAGCATCTTCTGCTCCTCTCAGTCTCAGCTTTCATAGCTTTGCGGGGCTGTTTTTGATTACAGGAATTTCAACTTTGTTTGCATTATTGATCTCGGAAAGTGTTATATGGCAAAAGCCCATTTTGATGGCTAAAGCATTGAGTCGAAGGTATTTGTCCTTCGTGGCACCTACCACGGAAATACGCGTTCATCCAACTAATGATTCAACTCACGGTATAGAGGTCGTTTAG 1434 0.4177 MCKCFSTLFSLFLIFLFVLQRAPTGNASNATSKYEEIKLRVGVPRKNGFQQFVHVVGDASQKNYNISGYCIEVFNAVITHLPFNVSLHVQPHIIDSSEGSGYDALLKLIPSKYDVVVGDMTILANRSSYVDFTVPYIGSGVKMVVPVQHGRDQNMWTFVKPFSWDLWLSIIIISTFIGIAILIMERNVNALPNEEGSTNQXKLCPATILWFPFSQAILPERQVVVKSCSRFVLMVWLLLAFVLMQSYTANLTSILTLDRLQPSFLNVNDLRKGGYYVGYQTGSFVHDVLIKQFKFEPSKLRPYSSSSEYHDALKLGSKNGGVAAIFDEVPYLKLYLQEYGSNYIMSGPKYRNAGFGFALPLNSNLTAYFSRAILDVTESDLMNEIEEKYFGKNEIGEQNSSEEASSAPLSLSFHSFAGLFLITGISTLFALLISESVIWQKPILMAKALSRRYLSFVAPTTEIRVHPTNDSTHGIEVV 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05167 478 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 441 IPR015683 -
Viun3g05167 478 Gene3D - 337 397 - -
Viun3g05167 478 Gene3D - 31 155 - -
Viun3g05167 478 Pfam Ligand-gated ion channel 393 425 IPR001320 GO:0015276|GO:0016020
Viun3g05167 478 Pfam Bacterial extracellular solute-binding proteins, family 3 62 392 IPR001638 -
Viun3g05167 478 Gene3D - 156 296 - -
Viun3g05167 478 SMART GluR_14 38 392 IPR001320 GO:0015276|GO:0016020
Viun3g05167 478 SUPERFAMILY Periplasmic binding protein-like II 11 393 - -
Viun3g05167 478 CDD GluR_Plant 38 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05167 Viun-Chr3 58293752 58295591 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05167 38 433 Ion Channels AT5G11210 38.404 6.78e-89 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05167 K05387 - gmx:100807817 686.026