Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05166 ATGAAGGGTAAATGCTTTTTATCTGTTTTGACTTGGTTATTGATTGTTTTGGTTGTGCTACTACAGGCGCCAACTGGAAATGGATCGAAGAAGGGAGAGATAAAGTTAAGAGTAAGGGTACCCATGAGAGATGGTTTCCCCCAATTTGTGAAAGTAGTTTGGGACCCTTCTCAACAAAAGTACACAGCATCAGGATATTGCATGGATGTTTTCAATGCCGTTCTGACCTACTTACCCTTCAATGTTTCTCTACATGTTCTACCTGCTGTTGTTAAGTCAAGCTATGGTAGCTATGGCTCTACATTTGACCATGCACTTCAAAAAACAAATCTTAATGATGTCGTGGTAGGGGATGTAACAATCCTGGCCAACCGTTCGAAGCTTGTAGATTTCACAGTGCCATATACTGGATCGGGAGTTAAAATGGTAGTACCAGTTAAACACGGGAGGGATCAGAACATGTGGACTTTTGTGAAACCATTCAGTTGGGATCTATGGTTGAGCATAATCATCATCTCTACCTTCATAGGGATTGCCATACTCATCATGGAAAGAAATGTAAACGCGTTGCCTAATCAGGAGGGTTCGCCAAATCAAACAAAGCTTGGCGCTTCAACTATCTTGTGGTTTCCAATATCACAAGCCATTCTTCCTGAGAGAGAAGTAGTGGTCAAAGGTTGCTCTAGATTTGTGTTGATGGTTTGGCTTCTATTGGCGTTCATCCTCATGCAAAGTTACACTGCTAACTTGACATCCATATTGACCTTGGATCAACTGCGACCCATTTTTCTGAATGTTAATGATCTAAGGAGAGAGGGTTATTACGTTGGATACCAGTTTGGGTCTTTCGTTTACGATGTGTTGATTGACCAATTTAAGTTTGACCCATCCAAACTAAGGCCATACAGAAACATTGGTGAGTACCATGACGCTCTAAAGCTTGGAAGCCAAAATGGGGGTGTTGCAGCTATATTCGATGAAGTTCCCTACCTTAAACTCTACCTTCAAGAATACGGATCCAATTACATTATGGCTGGCCCCGAATATAGAAATGCTGGCTTTGGTTTTGTCTTCCCTTTAAACTCCAATCTCACGGCTTACTTTTCGAGAGCCATTCTGAATGTGATTGAAAGTGGATTAATGAATGAGATTGAGGACAAACATTTTGGAAAGAATTATGTTGGAGGAGAACACGAGTCTGCGCAAATATCTTCTTCACCTCTCAGTCTCAGCTTTCATAGCTTCTCTGGGTTTTTCTTTATTTCTGGGATTTCTACTTTATTAGCGTTATTGGTTTCAGAAAGATTTATTTGGCAAAGACTAATTCTGATGGCTAAAGCATTGACTGAGATTATGTCCCCAATTCATCTTTTCAAGAAGGAAACACGCACTCGTCCAATCCAGGATTCTATTCATGAAACGGAGGCTTAA 1431 0.4074 MKGKCFLSVLTWLLIVLVVLLQAPTGNGSKKGEIKLRVRVPMRDGFPQFVKVVWDPSQQKYTASGYCMDVFNAVLTYLPFNVSLHVLPAVVKSSYGSYGSTFDHALQKTNLNDVVVGDVTILANRSKLVDFTVPYTGSGVKMVVPVKHGRDQNMWTFVKPFSWDLWLSIIIISTFIGIAILIMERNVNALPNQEGSPNQTKLGASTILWFPISQAILPEREVVVKGCSRFVLMVWLLLAFILMQSYTANLTSILTLDQLRPIFLNVNDLRREGYYVGYQFGSFVYDVLIDQFKFDPSKLRPYRNIGEYHDALKLGSQNGGVAAIFDEVPYLKLYLQEYGSNYIMAGPEYRNAGFGFVFPLNSNLTAYFSRAILNVIESGLMNEIEDKHFGKNYVGGEHESAQISSSPLSLSFHSFSGFFFISGISTLLALLVSERFIWQRLILMAKALTEIMSPIHLFKKETRTRPIQDSIHETEA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05166 476 Gene3D - 155 290 - -
Viun3g05166 476 Gene3D - 30 154 - -
Viun3g05166 476 Pfam Bacterial extracellular solute-binding proteins, family 3 101 391 IPR001638 -
Viun3g05166 476 Gene3D - 316 354 - -
Viun3g05166 476 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 440 IPR015683 -
Viun3g05166 476 SUPERFAMILY Periplasmic binding protein-like II 8 392 - -
Viun3g05166 476 CDD GluR_Plant 35 389 - -
Viun3g05166 476 Pfam Ligand-gated ion channel 392 424 IPR001320 GO:0015276|GO:0016020
Viun3g05166 476 Gene3D - 355 389 - -
Viun3g05166 476 SMART GluR_14 35 391 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05166 Viun-Chr3 58281188 58287819 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05166 35 459 Ion Channels AT2G29110 40.181 4.10e-83 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05166 K05387 - gmx:100807817 586.645