Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05165 ATGAAGGGTAAGTGCTTTTTATCTCTTTTGACTTGGTCATTAATTGTGTTGCTCGTGCTACTAGAGGCACCAACTGGAAATGGATCAAATGGTAGATTGGAGAATGGAGAGATAAAGTTAACAGTAAGGGTACCCGTAAGAGATGGTTTCCCCCAGTTTGTGAAAGTAGTTTGGGACCCTTCTCAACAAAAGTACACAGCATCAGGATATTGCATGGATGTTTTCAATGCCGCTGTAACCTACTTACCCTTCAATGTTTCTCTACATCTTCTACCTGCTGCTGTTGAGTCAAGCTATGGTTTTAGATTTGACCAAGCACTTCAAAAACAAATCCCGCCAAAGAATGAGGTCGTGGTAGGGGATGTAACAATCCTAGCCAACCGTTCAAATTACGCAGATTTCACAGTGCCATATACTGCATCGGGAGTTAAAATGGTAGTACCAGCTAAACATGGGAGGGATCAGAACATGTGGACTTTTGTGAAACCCTTCAGTTGGGATCTGTGGTTGAGCATAATCATCATCTCTACCTTCATAGGGCTTGCCATACTCATCATGGAAAGAAACGTAAACGCGTTGCCTAATCAGGAGGGTTCGCCAAATCAAACAAAGCTTGGCCCTGCAACTATCTTGCTGTTTCCAATTTCTCAAGCCATTCTTCCTGAAAGAGAAGTAGTGGTCAAAGGTTGCTCGAGATTTGTGTTGATGGTTTGGCTTGTATTGGCGTTCGTCCTCATGCAAAGTTACACTGCTAACTTGACTTCTATATTGACCTTGGATCAACTGCAACCAAGCTTTCTGAACGTTAATGATTTAAGGAGAGAGGGTTATTACGTTGGATACCAAGGGGGGTCTTTCGTTTACGATGTGTTGATTGACCGGTTTAAGTTTGACCCATCCAGACTAAGGCCATACAACAACACTGGTGAGTACCATGATGCTCTAAAGCTTGGAAGCAAAAATGGGGGTGTTGCAGCTATATTCGATGAAGTTCCCTACCTTAAACTCTACCTTCAAGAATACGGATCCAATTACATCATGTCTGGCCCCGAATATAGAAATGCAGGGTTTGGTTTTGTATTCCCTTTAAACTCCAATCTCACGGCTTACTTCTCGAGAGCCATCCTGAATGTGATTGAAAGTGGATTAATGAATGAGATTGAGGAGAAATATTTTGGAGAAGACTCGTCTGAGGAAACATCTTCTTCTGAACCTCTCAGTCTCAGCTTTCGTAGCTTCGCTGGGCTTTTCATTATTTCTGGGATTTCTACTTTATTAGCGTTATTGGTTTCAGAAAGATTTATTTGGCGAAGACTAATTCTGATGGCTAAAGCATTGACTGAGATTATGTCCGCAATTCATCTTTTCAAGAAGGAAGCACGCACTCATCCAATTCAGGATTCTACTCATGGAACGGAGGCTTAA 1425 0.4204 MKGKCFLSLLTWSLIVLLVLLEAPTGNGSNGRLENGEIKLTVRVPVRDGFPQFVKVVWDPSQQKYTASGYCMDVFNAAVTYLPFNVSLHLLPAAVESSYGFRFDQALQKQIPPKNEVVVGDVTILANRSNYADFTVPYTASGVKMVVPAKHGRDQNMWTFVKPFSWDLWLSIIIISTFIGLAILIMERNVNALPNQEGSPNQTKLGPATILLFPISQAILPEREVVVKGCSRFVLMVWLVLAFVLMQSYTANLTSILTLDQLQPSFLNVNDLRREGYYVGYQGGSFVYDVLIDRFKFDPSRLRPYNNTGEYHDALKLGSKNGGVAAIFDEVPYLKLYLQEYGSNYIMSGPEYRNAGFGFVFPLNSNLTAYFSRAILNVIESGLMNEIEEKYFGEDSSEETSSSEPLSLSFRSFAGLFIISGISTLLALLVSERFIWRRLILMAKALTEIMSAIHLFKKEARTHPIQDSTHGTEA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05165 474 Gene3D - 34 157 - -
Viun3g05165 474 CDD GluR_Plant 39 392 - -
Viun3g05165 474 Pfam Bacterial extracellular solute-binding proteins, family 3 105 394 IPR001638 -
Viun3g05165 474 Gene3D - 307 357 - -
Viun3g05165 474 Pfam Ligand-gated ion channel 395 422 IPR001320 GO:0015276|GO:0016020
Viun3g05165 474 Gene3D - 358 392 - -
Viun3g05165 474 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 438 IPR015683 -
Viun3g05165 474 Gene3D - 158 290 - -
Viun3g05165 474 SMART GluR_14 39 394 IPR001320 GO:0015276|GO:0016020
Viun3g05165 474 SUPERFAMILY Periplasmic binding protein-like II 11 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05165 Viun-Chr3 58264677 58267031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05165 35 463 Ion Channels AT2G29110 40.265 2.81e-86 282