Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05164 ATGGCACAGACTTATTGGATCTTTATATCTGTTTTGTCTTGGCTATTAATTGTTTTGGTTGTGCTACTACAGGCGCCAACTGGAAATGGATCAAATGGTGGATTGGAGAATGGAGAGATAAAGTTAAGAGTAAAGGTACCCGTGAGAGATGGTTTCCCCCAATTTGTGAAAGTAGTTTGGGACCCTTCTCAACAAAAGTACAACGTATTTGGATATTGCATGGATGTTTTCAATGCCGTTCTAACCTACTTACCCTTCAATGTTTCTATACATATTGTACCTGATGTTGTTGAGCCAAGCCAGGTTTATAGAACACACCATTCAATTCTAAAACTAAACACAACAGAGAGCGACGTTGTGGTAGGAGATATGACGATCCTGGCCTACCGTTCGAAAATTGTAGATTTCACAGTGCCATATATTGGATCAGGTGTTAAAATGGTAGTACCAGTTAAACACGGGAGGGATCAAAACATGTGGACTTTTGTGAAACCCTTCAGTTGGGATCTCTGGTTGAGCATAATCATCATCTCTACCTTCATAGGGATTGCCATACTCATCATGGAAAGAAACGTAAACGCGCTGCCTAATCAAGAGGCTTCTGCAAATCAAAAAAAACTTCGCCCTGCAACCATCTTATGGTTTCCAATCTCACAAGCCATTCTTCCTGAAAGACAAGTAGTGGTAAAAAGCTGCTCAAGATTTGTGCTGATGGTTTGGCTTCTACTGGCGTTGGTCCTCATGCAAAGTTACACTGCTAACTTGACTTCTATATTGACCTTAGATCAACTGCGACCCAGTTTTCTGAACCTTAATGATATAAGGAGAGAAGGTTATTACGTTGGATACCAGTTTGGGTCTTTCGTTTACGATGTGTTGATTGACCAATTTAAGTTTGATCCATCCAGACTAAGGCCATACAACAACATTGGTGAGTACCATGATGCTCTAAAGCTTGGAAGCAAAAATGGGGGTGTTGCAGCTATATTCGATGAAGTGCCCTATCTTAAACTCTACCTTCAAGAATACGAATCCAATTACATTATGGCTGGCCCCGAATATAGAAATGCAGGGTTTGGTTTTGCATTCCCTTTAAAGTCCAATCTCACGGCTTACTTTTCGAGAGGCATCCTGAATGTGATGGAAAGTGGATTAATGAATGAGATTGAGGACAAATATTTTGGAAAGAGTAGTATTGGAGAAGACTCGTCTGCGGAAACATCTTCTTCTGAACCTCTCAGTCTCAGCTTTCATAGCTTCTCTGGGCTTTTCTTTATTTCTGGGATTTCTACTTTATTAGCGTTATTGGTTTCAGAAAGATTTATTTGGCAAAGGCTTGTTTTGAAGCATTGTCTGAGAGGTATGTCCCTAATTCCACTTTTCAAGAAGGAAACACGCACTCATCCAACTCATGATTCAACTCATGGAACAGAGGCTTAA 1440 0.4035 MAQTYWIFISVLSWLLIVLVVLLQAPTGNGSNGGLENGEIKLRVKVPVRDGFPQFVKVVWDPSQQKYNVFGYCMDVFNAVLTYLPFNVSIHIVPDVVEPSQVYRTHHSILKLNTTESDVVVGDMTILAYRSKIVDFTVPYIGSGVKMVVPVKHGRDQNMWTFVKPFSWDLWLSIIIISTFIGIAILIMERNVNALPNQEASANQKKLRPATILWFPISQAILPERQVVVKSCSRFVLMVWLLLALVLMQSYTANLTSILTLDQLRPSFLNLNDIRREGYYVGYQFGSFVYDVLIDQFKFDPSRLRPYNNIGEYHDALKLGSKNGGVAAIFDEVPYLKLYLQEYESNYIMAGPEYRNAGFGFAFPLKSNLTAYFSRGILNVMESGLMNEIEDKYFGKSSIGEDSSAETSSSEPLSLSFHSFSGLFFISGISTLLALLVSERFIWQRLVLKHCLRGMSLIPLFKKETRTHPTHDSTHGTEA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05164 479 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 445 IPR015683 -
Viun3g05164 479 Gene3D - 37 159 - -
Viun3g05164 479 SMART GluR_14 41 396 IPR001320 GO:0015276|GO:0016020
Viun3g05164 479 SUPERFAMILY Periplasmic binding protein-like II 14 396 - -
Viun3g05164 479 Gene3D - 314 359 - -
Viun3g05164 479 Pfam Ligand-gated ion channel 397 429 IPR001320 GO:0015276|GO:0016020
Viun3g05164 479 CDD GluR_Plant 41 394 - -
Viun3g05164 479 Gene3D - 360 394 - -
Viun3g05164 479 Gene3D - 160 293 - -
Viun3g05164 479 Pfam Bacterial extracellular solute-binding proteins, family 3 71 396 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05164 Viun-Chr3 58257421 58259647 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05164 41 437 Ion Channels AT5G11210 38.000 4.03e-83 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05164 K05387 - gmx:100807817 544.658