Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05151 ATGCCTCATCCCACGCACCACCCCCAATCCCAACCCCAACCCCAACCCCAACCAAAACCTAATCCCAACCTTCTCTCTCTCTTCCTCAAACCCATCATTATGCTTATTCTCACCTCCCTCTTCTTCCTCTTCATAGGCTTCGCTGCCTTTCTCCTTCTCCACCTCTTCCTCCTTGGCGGCGCCTTCCACCGCCTTCGCTTCCGCCCCTCCTCCGCCTCCGCCTCCGCTTCCAACGCCCTCCTTCCTCGCGAAATCAATAAGCTCCCTCGCTTTCGCCTCTCCCGGGGATCCCACATGCTAGCCGACTCCCACTGCGTTGTCTGTTTAGACGCCTTTCGCAGCGGCCAGTGTTGCCGGAAACTCGCCGCCTGCGGTCACGTCTTTCACCGCAGGTGCGTCGACACGTGGCTCCTCAAAGTCGCCGCATGCCCCACGTGCCGTACACCCGTGCGATTTAATGCCGGGCCTCCAGTACATGACGCAACACTAGGTTCTGCTTTTGGCCAGTTTCAAGCCTGCGAAACTGACTCCATTGCCGACACCCTTTTATAG 552 0.5833 MPHPTHHPQSQPQPQPQPKPNPNLLSLFLKPIIMLILTSLFFLFIGFAAFLLLHLFLLGGAFHRLRFRPSSASASASNALLPREINKLPRFRLSRGSHMLADSHCVVCLDAFRSGQCCRKLAACGHVFHRRCVDTWLLKVAACPTCRTPVRFNAGPPVHDATLGSAFGQFQACETDSIADTLL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05151 183 SMART ring_2 105 146 IPR001841 -
Viun3g05151 183 Pfam Ring finger domain 104 147 IPR001841 -
Viun3g05151 183 MobiDBLite consensus disorder prediction 1 20 - -
Viun3g05151 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 154 IPR013083 -
Viun3g05151 183 SUPERFAMILY RING/U-box 97 153 - -
Viun3g05151 183 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Viun3g05151 183 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05151 Viun-Chr3 58099802 58101291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05151 19 168 C3H Transcription Factor Family AT2G18670 45.033 1.21e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05151 - - pvu:PHAVU_003G150700g 244.588