Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05118 ATGCTCTTCTCTCCCTCCTCTTCCACTCCCCCGCTCATGGCTCTGCACTTCCTCTCTCTCCTCTTTTTCCTCTCTCTCTCCTCTGCTTCTCAGCCTCGCAATCCCGAAGTGGTGGCTTTGATGAACATAAAAGCAGCTCTCAATGATCCTCACGGCGTCTTGAATAACTGGGATGAATACTCCGTCGACGCTTGCAGTTGGGCCATGATCACTTGCTCTTCCGATGACCTTGTCATAGGCTTTGGAGCGCCTAGCCAATCTCTCTCCGGCACTTTCTCTCCGGCAATCGGAAATCTAACAAATCTTCGACAAGTATTGCTGCAGAATAACAATATCTCAGGCAATATACCACCGGAACTTGGAGCGCTTCCCAAGCTTCAGACATTAGACCTTTCCAATAACCGATTCTCAGGGGTGATTCCTGCATCTCTTAGTCAATTGAATAGTCTCCAGTACCTGAGGCTCAACAACAATAATTTGTCCGGATCCTTTCCCGAGTCACTGGCAAAAACCCCACAGCTTGCTTTCTTGGACCTGTCTTATAACAATCTCAGTGGACCATTACCTAAGTTCCCAGCCAGGTCATTCAATATTGTGGGCAACCCATTAGTTTGTGGGAGCAGCACTACTGAAGGTTGCTCTGGGTCAGCGACCCTAATACCAATTTCCTTCTCGCAAGTGTCATCAGAAGGAAAACACAAATCCAAAAAACTAGCAATAGCACTTGGGATCAGTCTTAGTTGTGCTTCTGTCATCCTCCTGCTTGTTGGGCTATTTTGGTATAGAAAGAAACGACAGCTGGGAGCCATCCTGTATATCAGTGATTACAAGGAAGAAGGAGTTCTTAGCTTGGGAAATCTAAAGAATTTCACTTTCAGAGAGCTTCAACATGCAACGGATAATTTCAGCTCCAAGAATATACTTGGTGCTGGAGGCTTTGGCAATGTCTATAGGGGGAAGTTTGGAGATGGCACGATGGTGGCGGTGAAAAGGTTGAAAGATGTTAATGGCAGTGCTGGCGAATCACAGTTCCAAACAGAGTTGGAGATGATCAGCTTGGCAGTTCATCGCAATTTACTTCGCTTAATTGGCTATTGTGCTACTCCTAATGAAAAACTTTTGGTTTACCCTTATATGTCTAATGGCAGTGTGGCCTCCAGGCTTAGAGGCAAACCAGCTTTAGATTGGAACACTAGAAAGAGGATTGCAATTGGAGCTGCCAGAGGCCTTCTGTATTTGCACGAGCAATGTGATCCAAAGATAATACACAGAGACGTGAAGGCCGCCAATGTGCTTCTGGATGACTATTGTGAGGCTGTTGTTGGAGATTTTGGCCTTGCAAAGCTCCTTGACCACGCTGATTCCCATGTCACCACTGCTGTCCGTGGCACTGTTGGGCACATTGCACCTGAGTACCTCTCCACCGGCCAATCATCTGAGAAAACAGATGTATTTGGGTTTGGCATTCTCTTGTTAGAGCTCATAACCGGAATGACAGCACTCGAGTTTGGGAAAACGGTGAATCAAAAAGGTGCTATGCTAGAGTGGGTTAGGAAAATACTACATGAAAAGAAGGTTGCAGTGTTGGTGGACAAAGAGCTAGGAAACAATTATGATAGAATAGAGGTGGGGGAGATGCTGCAAGTTGCTTTACTGTGTACTCAATATTTGACAGCCCACCGCCCTAAAATGTCTGAAGTGGTTCGAATGCTAGAAGGTGACGGGCTTGCTGAGAAGTGGGCATCATCACATAATTACGGTAATCACGACATGAACCCCAGCCACAGCAACAATAGTTGCAATAGTTCATCCCTCCCTATCTCTGCTTCCAAACATGATGATGATGTTCATGACCGTTCCAGCATGTTTGGCATGACAGTGGATGATGATGATGAACAGTCTTTGGAATCCTATGCCATGGAACTCTCTGGTCCTAGATAA 1941 0.4601 MLFSPSSSTPPLMALHFLSLLFFLSLSSASQPRNPEVVALMNIKAALNDPHGVLNNWDEYSVDACSWAMITCSSDDLVIGFGAPSQSLSGTFSPAIGNLTNLRQVLLQNNNISGNIPPELGALPKLQTLDLSNNRFSGVIPASLSQLNSLQYLRLNNNNLSGSFPESLAKTPQLAFLDLSYNNLSGPLPKFPARSFNIVGNPLVCGSSTTEGCSGSATLIPISFSQVSSEGKHKSKKLAIALGISLSCASVILLLVGLFWYRKKRQLGAILYISDYKEEGVLSLGNLKNFTFRELQHATDNFSSKNILGAGGFGNVYRGKFGDGTMVAVKRLKDVNGSAGESQFQTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKILHEKKVAVLVDKELGNNYDRIEVGEMLQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWASSHNYGNHDMNPSHSNNSCNSSSLPISASKHDDDVHDRSSMFGMTVDDDDEQSLESYAMELSGPR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05118 646 Gene3D Transferase(Phosphotransferase) domain 1 379 589 - -
Viun3g05118 646 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Viun3g05118 646 FunFam Putative LRR receptor-like serine/threonine-protein kinase 33 215 - -
Viun3g05118 646 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Viun3g05118 646 MobiDBLite consensus disorder prediction 610 626 - -
Viun3g05118 646 MobiDBLite consensus disorder prediction 587 646 - -
Viun3g05118 646 SMART serkin_6 302 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05118 646 SUPERFAMILY Protein kinase-like (PK-like) 285 572 IPR011009 -
Viun3g05118 646 SMART LRR_typ_2 147 170 IPR003591 -
Viun3g05118 646 SMART LRR_typ_2 99 122 IPR003591 -
Viun3g05118 646 SMART LRR_typ_2 123 146 IPR003591 -
Viun3g05118 646 MobiDBLite consensus disorder prediction 587 609 - -
Viun3g05118 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Viun3g05118 646 FunFam Somatic embryogenesis receptor kinase 1 272 378 - -
Viun3g05118 646 FunFam Somatic embryogenesis receptor-like kinase 1 379 591 - -
Viun3g05118 646 Gene3D Phosphorylase Kinase; domain 1 272 378 - -
Viun3g05118 646 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 15 581 - -
Viun3g05118 646 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515
Viun3g05118 646 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Viun3g05118 646 Pfam Protein kinase domain 303 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05118 646 ProSiteProfiles Protein kinase domain profile. 302 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g05118 646 SUPERFAMILY L domain-like 33 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05118 Viun-Chr3 57795883 57801324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05118 17 646 Receptor kinase-like Gene Family AT5G16000 63.566 0.0 792
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Viun3g05118 Pkinase 4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05118 - - gmx:100797186 1135.94