Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g05116 ATGGCCAAAAGATCACACTCACAGCTTCGAACCCAGAAAAACAATAATGCAACCAACATTGCCAACAATCTTAATGCGACAAACACTGTCCCCACCAAGGTCAAACGAACAAGGAGAAGTGTCCCCAGAGACTCCCCTCCTCAACGCAGCTCCATATACCGAGGAGTCACAAGGCACCGATGGACTGGTCGATACGAAGCTCATTTATGGGACAAGCATTGCTGGAATGAATCACAGAACAAAAAAGGACGACAAGTTTACCTTGGTGCTTATGACAATGAAGTCGCAGCAGCACATGCTTATGATCTAGCTGCACTTAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCAAACTATCTGAACGAACTGAAAGAAATGGGAGGTCAATCACGAGAGGAGTATATTGGATCTCTGAGGAGGAAAAGCAGTGGTTTCTCTCGAGGGATTTCTAAATACAGAGGGGTTGCAAGACATCATCACAATGGAAGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGCAATAAATATCTTTATCTGGGAACTTACGCTACCCAAGAAGAAGCTGCTACGGCCTATGACCTCGCAGCTATAGAATACCGTGGACTCAACGCTGTCACCAATTTCGATCTCAGCCGTTACATTAAGTGGCTTAACCCTAATAATAACAACAATAATGAGCAGATTAGCATTAATCTCAGTGACATGAATAACAATAATTGCAGCAGCAGCAGCAACTTCACCCCAAACCCTGATCAAGAACATGAGCAAAAACTAAGCTTCCTCCACAACCAGGATTCACTGAATAGTACTGTTGTAGAAGAAGCCACGTCGGTGCCACATCAGCCCCGTGCAGCGGGTGCCACGTCAGCGTTGGAGCTTCTGCTTCAGTCGTCGAAGTTCAAGGAAATGATGGAGATGACATCGGTGGCCAATATGTCGACACAGATGGAGTCTGAGTTGCCACAGTGTGCGTTTCCCGATCACATTCAAACGTACTTTGAGTATGAAGATTCCGACAGATACGAGGAAGTGGATGATCTCATGTTCAAGTTCAACGAGTTCAGCTCCATTGTGCCGTTTTATCACTGCGACGAGTTCCAGAGTTGA 1116 0.4543 MAKRSHSQLRTQKNNNATNIANNLNATNTVPTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNESQNKKGRQVYLGAYDNEVAAAHAYDLAALKYWGQDTILNFPLSNYLNELKEMGGQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLNPNNNNNNEQISINLSDMNNNNCSSSSNFTPNPDQEHEQKLSFLHNQDSLNSTVVEEATSVPHQPRAAGATSALELLLQSSKFKEMMEMTSVANMSTQMESELPQCAFPDHIQTYFEYEDSDRYEEVDDLMFKFNEFSSIVPFYHCDEFQS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g05116 371 FunFam AP2-like ethylene-responsive transcription factor 51 120 - -
Viun3g05116 371 ProSiteProfiles AP2/ERF domain profile. 154 212 IPR001471 GO:0003700|GO:0006355
Viun3g05116 371 CDD AP2 153 214 IPR001471 GO:0003700|GO:0006355
Viun3g05116 371 FunFam AP2-like ethylene-responsive transcription factor 153 214 - -
Viun3g05116 371 Pfam AP2 domain 153 204 IPR001471 GO:0003700|GO:0006355
Viun3g05116 371 Pfam AP2 domain 52 110 IPR001471 GO:0003700|GO:0006355
Viun3g05116 371 ProSiteProfiles AP2/ERF domain profile. 52 118 IPR001471 GO:0003700|GO:0006355
Viun3g05116 371 MobiDBLite consensus disorder prediction 1 51 - -
Viun3g05116 371 SMART rav1_2 154 218 IPR001471 GO:0003700|GO:0006355
Viun3g05116 371 SMART rav1_2 52 124 IPR001471 GO:0003700|GO:0006355
Viun3g05116 371 Gene3D AP2/ERF domain 153 214 IPR036955 GO:0003700|GO:0006355
Viun3g05116 371 Gene3D AP2/ERF domain 52 120 IPR036955 GO:0003700|GO:0006355
Viun3g05116 371 MobiDBLite consensus disorder prediction 7 35 - -
Viun3g05116 371 SUPERFAMILY DNA-binding domain 51 120 IPR016177 GO:0003677
Viun3g05116 371 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 17 280 - -
Viun3g05116 371 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Viun3g05116 371 PRINTS Ethylene responsive element binding protein signature 194 214 IPR001471 GO:0003700|GO:0006355
Viun3g05116 371 SUPERFAMILY DNA-binding domain 153 214 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g05116 Viun-Chr3 57760362 57763220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g05116 48 216 AP2-EREBP Transcription Factor Family AT5G57390 73.373 8.35e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Viun3g05116 AP2 7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g05116 K09285 - gmx:100790871 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05116 3 57760362 57763220 Viun3g05116 3 57760362 57763220 ECH